Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69170 152 / 3e-41 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G50570 129 / 3e-33 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 129 / 3e-33 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G33810 118 / 1e-31 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT5G43270 124 / 5e-31 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT2G42200 123 / 8e-31 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT1G27370 123 / 1e-30 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G20980 125 / 4e-30 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT3G60030 125 / 4e-30 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G76580 123 / 1e-29 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097900 [exp] 711 / 0 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G060400 [exp] 254 / 8e-78 AT1G69170 153 / 4e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.012G100700 [exp] 146 / 2e-39 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.015G098900 [exp] 146 / 3e-39 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.018G149900 [exp] 129 / 1e-32 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.016G048500 [exp] 127 / 3e-32 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.004G046700 [exp] 120 / 4e-32 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.003G169400 [exp] 125 / 5e-32 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.001G058600 [exp] 126 / 6e-32 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036812 [exp] 205 / 1e-60 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10000643 [exp] 205 / 5e-59 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021141 [exp] 164 / 2e-44 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 155 / 3e-41 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10023818 [exp] 137 / 7e-36 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10021034 [exp] 133 / 2e-34 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 132 / 3e-33 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10016275 [exp] 128 / 3e-33 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10003126 [exp] 127 / 1e-32 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10015764 [exp] 127 / 3e-32 AT5G50670 160 / 2e-45 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.010G154300.2 pacid=42799708 polypeptide=Potri.010G154300.2.p locus=Potri.010G154300 ID=Potri.010G154300.2.v4.1 annot-version=v4.1 ATGGACTTCTGGAGTTATGCTTCAGAAGGAAAAGGCCTTCTGTTCTCTGATGAAATAGATTTATCTGCTGATGCATTTACAAGAAGTAGAAAAGCATCGA TAGGATGCGATACAGAAGCGGCTGAGAGTGCAGAGTCTTTAGATCTTGGTTTCTCTGAAATCCCAAGAAAACCCTTTCATGGTAGCAAAACGGGTGCGGG GATGTTTGGTGGTAGCTGTGTTGGTATTGATTCAAGTAAACTAGTAGTAGGCTCTCCTAATTGTATGATTGCCTCCAATTCGTCAATGGAATCTAGGTCC AATCATTCGAATTCTCTCATGGAATCTAATAGTCAGGATTCATCACTATTTGATTTGAAGCTAGGGAGATTGGCTGATTGCATAGATGCACAGAATAGTA GGTTTTCGAAAGAGAGATTTTTGTTATCTTCAGCAAGTCCAACTACTCAGGCAAAGCGTGCTCCAATGGCGAGTTTGCGCCCTCGGATTTCCTTTTGCCA GGTCTATGATTGTAACAAGGATCTTAGTTCCTCCAAGGATTACCACAAGAGGCATAAAGTTTGTGAGGTTCATACGAAAACTCCTCAAGTTATTGTTAAT GGCAATGAACAGAGGTTTTGTCAGCAGTGTAGCAGGTTTCACTTGCTGGTTGAGTTTGATGATGGTAAGCGCAGTTGTCGTAAACGCCTGGCAGGCCACA ATGAACGCAGACGAAAGCCTCAATTTGGCACCAAATTTCTGGGGACTTCCTTGGCAAAGAGAACATCCTTTCTTTTTCCAAACATGCTTCCAGGAGGTAC TTTTTGTCCACAAAGTTATGAAGAAGATAATTGGCGTAAGCATGTTAAATTGGAAGAGAATTCAATTTACAGCTCTCCATCGGCAATACCCATAAGAAAT GGGCAGTTGCTGCCAAGGTCATTCCTCCATTTGCATGGCAACAGGATACAAAAGACTTGTGGAATTTCTCCACTGGACACTGAGGACCTCACTATTTCTA ACACAGCAACAACTATTAATGAGTTAGCTGGGGTGTCGCACTCTAGCTGTGCTCTCTCTCTTCTGTCAGCAGCTGAATCACAGGACTTGAGCCATTCTGC AGGAAATATAATGGTTAGGCCCTTGGTCAGTCAAGCGGGTGGTGCTTGTCAGACCTTGGGTATTGCTAACAAATCTTTAGGGGTAGGCTCTTCAGAAAAG TACGTGCCAATTGGAATTAATTCATTTGGAATGAATTTCATTGAAGTTGACAATATGGGGCCATTTGGGGTTTCTGGTTCTGGTCATGCTGCCGACCTTA AAGTTGAAACAGATGGATTTCTACATCACTCAGATTTCTTGAACGCCAAGCATTGTGTTTCTCCAGCAAATGAATCTACTGTGGATTGGCTTCAACTGTC ATCCCATCTTCAGAGGGTGGAGCAACAGAGGAACTCCATGAAAGTGAAGCATGAAAATGAAGATTTCTGTAGTTTTGGTGCCACTTATAGGGTGTGA
AA sequence Show only first row Show all	>Potri.010G154300.2 pacid=42799708 polypeptide=Potri.010G154300.2.p locus=Potri.010G154300 ID=Potri.010G154300.2.v4.1 annot-version=v4.1 MDFWSYASEGKGLLFSDEIDLSADAFTRSRKASIGCDTEAAESAESLDLGFSEIPRKPFHGSKTGAGMFGGSCVGIDSSKLVVGSPNCMIASNSSMESRS NHSNSLMESNSQDSSLFDLKLGRLADCIDAQNSRFSKERFLLSSASPTTQAKRAPMASLRPRISFCQVYDCNKDLSSSKDYHKRHKVCEVHTKTPQVIVN GNEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQFGTKFLGTSLAKRTSFLFPNMLPGGTFCPQSYEEDNWRKHVKLEENSIYSSPSAIPIRN GQLLPRSFLHLHGNRIQKTCGISPLDTEDLTISNTATTINELAGVSHSSCALSLLSAAESQDLSHSAGNIMVRPLVSQAGGACQTLGIANKSLGVGSSEK YVPIGINSFGMNFIEVDNMGPFGVSGSGHAADLKVETDGFLHHSDFLNAKHCVSPANESTVDWLQLSSHLQRVEQQRNSMKVKHENEDFCSFGATYRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	0	1
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.004G214000 [exp]	1.73	0.7834
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	2.00	0.7980
AT5G27690			Heavy metal transport/detoxifi...		Potri.013G017700 [exp]	2.00	0.8205
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G145800 [exp]	4.69	0.7175	Pt-CSARF2.3
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	7.48	0.7369
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.005G089800 [exp]	8.66	0.7092
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.005G141400 [exp]	9.16	0.6933	Pt-WRKY15.2
AT3G22970			Protein of unknown function (D...		Potri.008G159800 [exp]	10.09	0.6807
AT4G06599			ubiquitin family protein (.1)		Potri.004G219300 [exp]	10.19	0.7347
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.002G133700 [exp]	10.39	0.7154	BES1.2

Compare expression of checked genes

Potri.010G154300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.