Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53430 180 / 2e-50 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 176 / 5e-49 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 147 / 7e-39 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29730 145 / 2e-38 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 141 / 8e-37 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 140 / 1e-36 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29740 140 / 1e-36 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 135 / 9e-35 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 130 / 2e-33 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 126 / 8e-32 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092700 [exp] 505 / 8e-172 AT1G53440 503 / 4e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014232 [exp] 479 / 4e-161 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014066 [exp] 344 / 4e-113 AT1G53420 272 / 3e-79 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G061500 [exp] 300 / 1e-93 AT1G53440 577 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011601 [exp] 275 / 2e-84 AT1G53440 571 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155600 [exp] 273 / 8e-84 AT1G53440 596 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011200 [exp] 271 / 4e-83 AT1G53440 600 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011400 [exp] 259 / 9e-79 AT1G53440 507 / 2e-163 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G012150 [exp] 258 / 3e-78 AT1G53440 574 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031374 [exp] 166 / 1e-45 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10010951 [exp] 160 / 3e-43 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 147 / 5e-39 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 145 / 4e-38 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 142 / 3e-37 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10005418 [exp] 140 / 1e-36 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 136 / 3e-35 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 105 / 1e-24 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 94 / 7e-21 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10004046 [exp] 61 / 8e-10 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.010G155800.3 pacid=42798401 polypeptide=Potri.010G155800.3.p locus=Potri.010G155800 ID=Potri.010G155800.3.v4.1 annot-version=v4.1 ATGTTTGTACTCAAAATAAGTTTTCTTGCAGGTAATTCCTTGTTTATAAATAGTGGTGGTGAGGAAGTAGATGACGGAAAAAATCATTATCATAACGATA CCTCATTATCAAGTTTTAATCTTAGTCCATCTGAGGATTGGGCTTATAGCTATGCTGGGGACTACCTCTGGGCAAAAGTCAATGCCAGTACTTTAGTAAG AAACTTGACGTGTGAAATTACTAACTCTAAGGCAAACATAGACAACAATTTTCGCCTTGCTCCCGTCTCTCTAACGTATTATGGCCTCTGCTTGCGTAAA GGCAAGTACATTGTGACACTTCACTTTGCTAAAGCATTATATTCTAAGAGTGAAGATTACAGCACATCAGGAAAACGAGTGTTTGATATATATATTCAGG GAATGATTGTAAAGAAAGATGTCAACATAAAGGAAATCCCTGGGAAAGAACATGAAGAAAGACGACTACAATTCAAGGTTAAAATAAATGATGGTTCGTT AGAGATCAAGTTCTTCTGGGCTGGCAAGGGATCTCTATACAACCCACCTGGTCTCAATGGACCTCTCATATCAGCTGTTTCGATCACTCGTGTTCCCAGA AAACTGCATGATTGGGAAATTGCGTTGATTGCAGTAGGCTGTATTTTGTTTCTGCTGCTGTTGTTGGCCTTCATGTGGAGAATGGGCTGGATAGGAGACA GAGAATTGCGAGAAACCACAGTGAAGATTGGAGAAAGAACTTTCACCCTTAAGCAGATCATTGATGCAACAAAAAAATTTAGTCCCAAGATGGAGCTTGG TAGCGGACGTTCTGGGATAGTATACAGGGCTCAAATATTGCAAGATCTGACTGTAGCAGTGAAGAAGCTATTCGCTCAATCAAATGCAGTCGATGAAATA GCAACTGAAGTTTATGTCAAGAAAGCCAAGGATTTGAAACACGACAACATTGTTAAATTGCTTTATATTTATTCAAGAAGGCACCTACATTTACTCATCT ACGAATTTATGGAAGTTGGCTCGCTCTGA
AA sequence Show only first row Show all	>Potri.010G155800.3 pacid=42798401 polypeptide=Potri.010G155800.3.p locus=Potri.010G155800 ID=Potri.010G155800.3.v4.1 annot-version=v4.1 MFVLKISFLAGNSLFINSGGEEVDDGKNHYHNDTSLSSFNLSPSEDWAYSYAGDYLWAKVNASTLVRNLTCEITNSKANIDNNFRLAPVSLTYYGLCLRK GKYIVTLHFAKALYSKSEDYSTSGKRVFDIYIQGMIVKKDVNIKEIPGKEHEERRLQFKVKINDGSLEIKFFWAGKGSLYNPPGLNGPLISAVSITRVPR KLHDWEIALIAVGCILFLLLLLAFMWRMGWIGDRELRETTVKIGERTFTLKQIIDATKKFSPKMELGSGRSGIVYRAQILQDLTVAVKKLFAQSNAVDEI ATEVYVKKAKDLKHDNIVKLLYIYSRRHLHLLIYEFMEVGSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53430			Leucine-rich repeat transmembr...		Potri.010G155800 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.011G008164 [exp]	9.05	0.9113
AT4G02550			unknown protein		Potri.006G196716 [exp]	12.00	0.8905
AT1G03670			ankyrin repeat family protein ...		Potri.013G133800 [exp]	12.72	0.9048
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G007866 [exp]	17.72	0.9086
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025100 [exp]	24.73	0.8941
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.014G124100 [exp]	26.38	0.8929
AT5G52960			unknown protein		Potri.016G123100 [exp]	29.05	0.8999
AT1G27170			transmembrane receptors;ATP bi...		Potri.006G282100 [exp]	30.80	0.8928
AT1G68820			Transmembrane Fragile-X-F-asso...		Potri.010G129932 [exp]	33.49	0.8978
AT4G02550			unknown protein		Potri.010G215600 [exp]	37.22	0.8846

Compare expression of checked genes

Potri.010G155800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.