Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02870 438 / 3e-157 VTC4 Inositol monophosphatase family protein (.1.2.3) AT1G31190 137 / 4e-38 IMPL1 myo-inositol monophosphatase like 1 (.1) AT4G39120 91 / 1e-20 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) AT5G09290 51 / 2e-07 Inositol monophosphatase family protein (.1) AT5G63980 51 / 4e-07 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G011000 [exp] 550 / 0 AT3G02870 440 / 5e-158 Inositol monophosphatase family protein (.1.2.3) Potri.006G014900 [exp] 525 / 0 AT3G02870 442 / 8e-159 Inositol monophosphatase family protein (.1.2.3) Potri.010G156500 [exp] 510 / 0 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.012G120492 [exp] 140 / 4e-39 AT1G31190 551 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.015G120400 [exp] 135 / 2e-37 AT1G31190 540 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.009G120600 [exp] 94 / 4e-22 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Potri.007G105100 [exp] 44 / 5e-05 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027343 [exp] 458 / 2e-164 AT3G02870 419 / 5e-149 Inositol monophosphatase family protein (.1.2.3) Lus10039046 [exp] 343 / 2e-118 AT3G02870 323 / 1e-110 Inositol monophosphatase family protein (.1.2.3) Lus10018305 [exp] 140 / 3e-39 AT1G31190 573 / 0.0 myo-inositol monophosphatase like 1 (.1) Lus10040601 [exp] 98 / 1e-23 AT1G31190 476 / 2e-169 myo-inositol monophosphatase like 1 (.1) Lus10041968 [exp] 97 / 3e-23 AT4G39120 447 / 6e-158 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10017976 [exp] 81 / 1e-17 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10037677 [exp] 47 / 9e-06 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037888 [exp] 44 / 0.0001 AT5G54390 497 / 6e-177 HAL2-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [poplar] [flax] Phospoesterase PF00459 [poplar] [flax] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Potri.010G156300.3 pacid=42798652 polypeptide=Potri.010G156300.3.p locus=Potri.010G156300 ID=Potri.010G156300.3.v4.1 annot-version=v4.1 ATGGCACAGAATGATTCTCTTTCAGAGTTCTTGCAGACTGCTGTTGAGGCAGCAAAGAGAGCTGGAGAGATAATCCGTGAAGGATTCTACCAGACCAAGC ATGTGGAGCATAAAGGCCTGGTGGATTTAGTTACTGAGACTGACAAGGCTTGTGAGGATCTTATTTTTAATTATCTCAAACAGCAGCACCCCTCACATAA GTTCATTGGGGAAGAAACTACTGCTGCCTGTGGTATTACAGAACTGACTGATGAACCGACATGGATAGTTGATCCTCTTGATGGAACAACCAACTTTGTC CATGGGTTTCCCTTCGTGTGCATTTCTATTGGTCTTACAATTGGAAAAGTTGCTACAGTAGGTGTTGTTTACAACCCAATAATGGATGAGCTTTTTACAG GTGTCCATGGAAAAGGTGCATTTCTGAATGGAAAACCCATAAAAGTATCATCTCAAAGTGAGCTTGTGAAATCTCTTCTTGCAACAGAGGCTGGAACAAA ACGTGACAAGTCTACTGTGGATGCCACTACGAACAGAATTAACAGCCTACTTTTCAAGGTGAGATCCCTTAGGATGACTGGCTCCTGTGCATTGAATCTT TGCGGAATTGCATGTGGAAGGATTGATTTGTTTTACGAAACCGGATATGGAGGCCCATGGGATGTGGCAGGTGGTGCTGTGATTGTCAAAGAAGCTGGAG GAATCGTTTATGACCCATCTGGTAAAGATTTTGACATCACTTCTCAAAGAGTCGCAGCTTCAAACCCGCTTTTGAAGGAAGCATTTGTTGAGGTTTTGCA GCAATCAGAATGA
AA sequence Show only first row Show all	>Potri.010G156300.3 pacid=42798652 polypeptide=Potri.010G156300.3.p locus=Potri.010G156300 ID=Potri.010G156300.3.v4.1 annot-version=v4.1 MAQNDSLSEFLQTAVEAAKRAGEIIREGFYQTKHVEHKGLVDLVTETDKACEDLIFNYLKQQHPSHKFIGEETTAACGITELTDEPTWIVDPLDGTTNFV HGFPFVCISIGLTIGKVATVGVVYNPIMDELFTGVHGKGAFLNGKPIKVSSQSELVKSLLATEAGTKRDKSTVDATTNRINSLLFKVRSLRMTGSCALNL CGIACGRIDLFYETGYGGPWDVAGGAVIVKEAGGIVYDPSGKDFDITSQRVAASNPLLKEAFVEVLQQSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156300 [exp]	0	1
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156500 [exp]	1.41	0.8298
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.016G011000 [exp]	3.16	0.6987
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.002G086000 [exp]	6.70	0.7025
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.017G122300 [exp]	9.48	0.7488
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Potri.010G102200 [exp]	10.58	0.7123	ASB1,Pt-TRP4.2
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Potri.008G172500 [exp]	12.84	0.6943
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.013G154700 [exp]	13.96	0.6853	Pt-EXP2.8,PtrEXPA2
					Potri.003G204425 [exp]	15.23	0.7324
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.003G052600 [exp]	19.97	0.6795
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	21.90	0.7276	Pt-PSPK3.1

Compare expression of checked genes

Potri.010G156300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.