Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RGP3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08900 656 / 0 RGP3 reversibly glycosylated polypeptide 3 (.1) AT3G02230 642 / 0 ATRGP1, RGP1 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) AT5G15650 639 / 0 REVERSIBLYGLYCOSYLATEDPOLYPEPTIDE2, RGP2, ATRGP2 reversibly glycosylated polypeptide 2 (.1) AT5G50750 579 / 0 RGP4 reversibly glycosylated polypeptide 4 (.1) AT5G16510 366 / 3e-126 RGP5 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097600 [exp] 699 / 0 AT3G08900 669 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.015G060300 [exp] 664 / 0 AT3G08900 650 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.004G117800 [exp] 656 / 0 AT5G15650 663 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.017G099100 [exp] 653 / 0 AT5G15650 671 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.012G101100 [exp] 623 / 0 AT3G02230 610 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Potri.019G051700 [exp] 366 / 4e-126 AT5G16510 493 / 1e-176 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2) Potri.015G099400 [exp] 111 / 6e-28 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017868 [exp] 660 / 0 AT5G15650 648 / 0.0 reversibly glycosylated polypeptide 2 (.1) Lus10000646 [exp] 658 / 0 AT3G08900 662 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10004640 [exp] 652 / 0 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10026676 [exp] 652 / 0 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10005076 [exp] 650 / 0 AT3G02230 662 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10036970 [exp] 642 / 0 AT3G08900 645 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10022443 [exp] 629 / 0 AT3G02230 642 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10034376 [exp] 603 / 0 AT3G02230 608 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10016749 [exp] 556 / 0 AT3G02230 570 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10034665 [exp] 411 / 7e-146 AT5G15650 416 / 7e-148 reversibly glycosylated polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03214 [poplar] [flax] RGP Reversibly glycosylated polypeptide
Representative CDS sequence Show only first row Show all	>Potri.010G156700.1 pacid=42799528 polypeptide=Potri.010G156700.1.p locus=Potri.010G156700 ID=Potri.010G156700.1.v4.1 annot-version=v4.1 ATGGCAGGATCTTCTGTCAAACCCACTCCGATTTTGAAAGATGAGCTCGATATAGTGATACCCACTATTAGAAACCTTGATTTCTTGGAGATGTGGAGGC CTTTTTTTGAGCAATATCACTTGATTATAGTCCAAGATGGTGACCCATCAAAGATCATCAAGGTCCCTGATGGTTTTGACTATGAGCTCTACAATAGGAA TGATATTAATAGGATTCTGGGTCCCAAGGCTTCTTGCATCTCATTCAAGGATTCTGCTTGTCGCTGCTTTGGTTACATGGTCTCCAAGAAGAAGTATATC TACACCATTGATGATGATTGCTTTGTTGCCAAAAATCCATCGGGTGAACTGATTAATGCACTCGAGCAGCACATCAAAAACCTTCTAAGCCCATCCACTC CATTTTTTTTCAACACTCTTTATGATCCATACAGAGAAGGTGCAGACTTTGTTCGTGGATATCCTTTCAGTCTTCGAGAAGGCGCTCCCACTGCTGTTTC TCATGGCCTCTGGCTTAATATCCCTGATTATGATGCTCCCACCCAGCTTGTGAAGCCTCGTGAGAGAAATACACGATATGTTGATGCTGTTCTGACAGTA CCTAAGGGAACCCTTTTCCCGATGTGCGGTATGAATCTGGGATTCAACCGTGAATTGATTGGACCTGCAATGTATTTTGGGCTCATGGGTGATGGCCAGC CAATTGGACGCTATGACGACATGTGGGCTGGCTGGTGCATGAAGGTCATATGTGACCATATGGGATGGGGAGTTAAGACTGGTTTGCCCTACATCTGGCA CAGCAAAGCAAGCAACCCGTTCGTTAACCTAAAAAAGGAGTACAAGGGTATCTACTGGCAGGAAGACCTGATCCCATTCTTCCAGTCTGCAGTTCTTCCC AAGGAATGCGTCACTGTTCAACAATGCTACATTGAACTTGCCAAGCAGGTCAAGGAGAAACTTGGCAAGGTTGATCCCTACTTCATTAAGCTAGCTGATG CCATGGTCACTTGGATTGAAGCTTGGGATGAACTCAACTCTTCAGGGGAAAAATCTTCAAAGAGTACCTCAAAGTAG
AA sequence Show only first row Show all	>Potri.010G156700.1 pacid=42799528 polypeptide=Potri.010G156700.1.p locus=Potri.010G156700 ID=Potri.010G156700.1.v4.1 annot-version=v4.1 MAGSSVKPTPILKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKIIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYI YTIDDDCFVAKNPSGELINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTV PKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHMGWGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDLIPFFQSAVLP KECVTVQQCYIELAKQVKEKLGKVDPYFIKLADAMVTWIEAWDELNSSGEKSSKSTSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.010G156700 [exp]	0	1	RGP3.2
AT5G20890			TCP-1/cpn60 chaperonin family ...		Potri.001G341100 [exp]	4.24	0.8731
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.017G113601 [exp]	8.24	0.8763
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Potri.017G033300 [exp]	21.21	0.8187	Pt-BIO2.2
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Potri.014G155900 [exp]	29.49	0.8576
AT5G40080			Mitochondrial ribosomal protei...		Potri.006G070700 [exp]	34.46	0.8314
AT3G60660			unknown protein		Potri.014G060000 [exp]	34.92	0.8541
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	40.84	0.8528
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Potri.002G003400 [exp]	40.86	0.8422	CDKB2.1
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.008G182300 [exp]	42.72	0.8292
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	43.47	0.8435

Compare expression of checked genes

Potri.010G156700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.