Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30180 562 / 0 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 561 / 0 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT5G05690 296 / 1e-95 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 289 / 4e-92 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 286 / 2e-91 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT1G12740 281 / 1e-89 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G50660 278 / 4e-88 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT4G19230 269 / 5e-85 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 266 / 6e-84 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 253 / 4e-79 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G117700 [exp] 612 / 0 AT5G38970 655 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Potri.017G099000 [exp] 609 / 0 AT3G30180 648 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.008G067500 [exp] 304 / 2e-98 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 297 / 6e-96 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.003G038200 [exp] 295 / 1e-94 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G018400 [exp] 290 / 8e-93 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.001G200100 [exp] 290 / 9e-93 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G026500 [exp] 284 / 1e-90 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G109100 [exp] 283 / 2e-90 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034377 [exp] 580 / 0 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10005075 [exp] 578 / 0 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10000647 [exp] 569 / 0 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10014240 [exp] 546 / 0 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10014850 [exp] 306 / 3e-99 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10040193 [exp] 296 / 3e-95 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10024495 [exp] 283 / 3e-90 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10003650 [exp] 282 / 4e-90 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10041794 [exp] 280 / 5e-89 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10028345 [exp] 277 / 8e-88 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.010G156800.3 pacid=42796950 polypeptide=Potri.010G156800.3.p locus=Potri.010G156800 ID=Potri.010G156800.3.v4.1 annot-version=v4.1 ATGGCAGTGCTATTGGTTCTGGCTTCTTGGTTGTTTGTAGGATTATTTGTCTGCTTTGTCTTTGCCATGAAATGGAATGAGATAAGGTATGGAAGGAAAG GATTGCCACCAGGGACAATGGGGTGGCCACTCTTTGGTGAGACCGCAGAATTTCTAAAACATGGACCTGATTTCATGAAAAAACAGAGAGCAAGGTACGG AAATTTATTTAGGTCACATGTTTTGGGCTTCCCTACCGTTATTTGCACGGATCCAGAGCTCAATAGATATATCCTTCTTAATGAAACCAGAGGGTTAGTT CCTGGCTATCCTCAGTCCTCGCAGGATATTCTAGGAAAACACAACGTTGGTGTTGTGACTGGTTCTGCTCATAAATACCTAAGAGGGTCGCTACTTTCCC TTGTTAACCCTACCATGATCAAAGACCATCTTTTGCTAAACATCGATGAGTCTGTTAGATCCTTTCTTGCCAACTGGGAAGGCAAAACAATTGATCTCCA GGACAGAACCGTTGAGTTCGCATTCGTCATTGCCTTCAAGCTGATCGTTGATAGTCAATCGAGTGTGATTTATGATAATTTCAAATCAGAGTTTGATAAG CTAGCAGCAGGGACAATTTCACTGGCCATCAACATTCCAGGCACTGCATATCATTCTGGAATGCAGGGAAGAACAAGGGTTGTCAAAATGTTGAGACAAG TCATTAAAGAGAGAAGAGCTTCTTCAGCAGTCCACAGTGATATTCTTGGCCAAATCATGAGCTGTGAAAATCAAAAATACCATTTGACCGATGATGAGAT GATCGATCAAATTATAACAATGTTGTACTCGGGTTATGAAACTGTCTCAACTACTATAATGATGGCCCTTAAGTATGTCCATGATAACCCTAAAGCTCTC CAAGAACTAAGAGAAGAACATTTAGCCATTCGAGCAAGACGAAAGCCAGAGGATCCAATTGACTGGGATGACTACAAGGGCATGAGGTTTACTCGCGCTG TGATTTTTGAAACCTCGAGGCTGGCTGCAGTTGTTAATGGTCTACTGAGGAAGACAAATCAGGATATCGAACTGAACGGGTTCCTTGTTCCAAAAGGATG GAGATTGTATGTTTCCTTGAGAGAGATCAACTTCGATCCAATCCTCTATCCAGAGCCTTCAACCTTCAATCCAAGGAGATGGATGGATAATGGCTTGGAG AATCACAACTACTGCTTTGTTTTTGGAGGAGGAACCAGGCTATGTCCTGGAAAGGAACTGGGCATGGTTAAAATCGCAACATTCCTTCACTACTTCGTCA CACAATACAGATGGGAGGAATCCGAGGGAATAGAGATTGTGAAATTTCCTAGGGTTGAAGCACGCAATGGACTGCCCATAAGGGTGTCAAAGTATTGA
AA sequence Show only first row Show all	>Potri.010G156800.3 pacid=42796950 polypeptide=Potri.010G156800.3.p locus=Potri.010G156800 ID=Potri.010G156800.3.v4.1 annot-version=v4.1 MAVLLVLASWLFVGLFVCFVFAMKWNEIRYGRKGLPPGTMGWPLFGETAEFLKHGPDFMKKQRARYGNLFRSHVLGFPTVICTDPELNRYILLNETRGLV PGYPQSSQDILGKHNVGVVTGSAHKYLRGSLLSLVNPTMIKDHLLLNIDESVRSFLANWEGKTIDLQDRTVEFAFVIAFKLIVDSQSSVIYDNFKSEFDK LAAGTISLAINIPGTAYHSGMQGRTRVVKMLRQVIKERRASSAVHSDILGQIMSCENQKYHLTDDEMIDQIITMLYSGYETVSTTIMMALKYVHDNPKAL QELREEHLAIRARRKPEDPIDWDDYKGMRFTRAVIFETSRLAAVVNGLLRKTNQDIELNGFLVPKGWRLYVSLREINFDPILYPEPSTFNPRRWMDNGLE NHNYCFVFGGGTRLCPGKELGMVKIATFLHYFVTQYRWEESEGIEIVKFPRVEARNGLPIRVSKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30180		CYP85A2, BR6OX2	brassinosteroid-6-oxidase 2 (....		Potri.010G156800 [exp]	0	1
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G114900 [exp]	4.47	0.7424
					Potri.012G100750 [exp]	7.34	0.7306
AT5G28780			PIF1 helicase (.1)		Potri.003G004501 [exp]	9.48	0.7306
AT1G43760			DNAse I-like superfamily prote...		Potri.010G033133 [exp]	12.64	0.7203
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.013G104900 [exp]	13.41	0.7138	AGL11.2
AT1G43760			DNAse I-like superfamily prote...		Potri.003G047001 [exp]	15.09	0.6601
					Potri.007G065950 [exp]	16.12	0.6591
					Potri.008G012050 [exp]	17.66	0.5528
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.015G091600 [exp]	17.88	0.6148	PtrLHT1
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Potri.002G092300 [exp]	24.49	0.5040

Compare expression of checked genes

Potri.010G156800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.