Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13700 383 / 1e-135 PGL1 6-phosphogluconolactonase 1 (.1) AT5G24400 261 / 6e-87 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G49360 226 / 5e-74 PGL2 6-phosphogluconolactonase 2 (.1) AT5G24420 217 / 2e-70 PGL5 6-phosphogluconolactonase 5 (.1) AT5G24410 207 / 2e-66 PGL4 6-phosphogluconolactonase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097200 [exp] 488 / 3e-176 AT1G13700 386 / 6e-136 6-phosphogluconolactonase 1 (.1) Potri.012G024400 [exp] 270 / 3e-90 AT5G24400 384 / 3e-134 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007200 [exp] 269 / 8e-90 AT5G24400 395 / 1e-138 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007300 [exp] 246 / 5e-82 AT5G24400 357 / 2e-124 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G020100 [exp] 160 / 2e-48 AT5G24400 229 / 9e-75 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G008401 [exp] 52 / 4e-09 AT5G24400 77 / 3e-18 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037065 [exp] 425 / 3e-152 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Lus10036919 [exp] 421 / 9e-151 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Lus10022352 [exp] 259 / 8e-86 AT5G24400 382 / 2e-133 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF01182 [poplar] [flax] Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Representative CDS sequence Show only first row Show all	>Potri.010G157200.2 pacid=42797776 polypeptide=Potri.010G157200.2.p locus=Potri.010G157200 ID=Potri.010G157200.2.v4.1 annot-version=v4.1 ATGGCTCATTCTAGGGTTCATAAAGATAGAGGAGAGTTGAGGATTCATGAGAATTTGGATGAGCTTGGCACTGATTTGGCAGAATATATTGCTGAATTAT CAGAGGCATCGGTGAAGGAGAGGGGTGTCTTTGCCATTGCCATATCTGGTGGTTCCCTCATTGGCTTGATGGGGAAACTTTGTGAAGCTCCTTATCACAA GACTGTAGACTGGGCTAAATGGTATATATTTTGGGCGGATGAACGTGTGGTGGGGAAAACTCATGCTGATAGCAATTATAAGCTTGCGAAGGATGGTCTT TTGTCGAAGGTGCCCGTGGTACCCAGTCATGTGAATTCTATCAACGATTCAGTGTCAGCAGAGGAAGCTGCTGATGACTATGAGTTTCATATTCGACAGT TAGTGAAAACACGGACAATTAATGTGTCTGATAATAGTGACTGCCCCAAGTTTGACCTCATCCTTCTTGGAATGGGTCCTGATGGTCATGTTGCTTCGCT ATTCCCTAACCACCCTATGCTTGACGAGAAATCGGAGTGGGTAACTTTTATTACCGACTCCCCCAAACCCCCACCGGAGAGGATCACATTCACTTTGCCT GTCATCAACTCAGCATCCAATGTGGCCGTGGTTGTGACAGGTGAGAGCAAAGCAGAGGCTGTACACTTGGCAATTGATGATGTAGGACCGGACTACCTGT CATTGCCTGCACGGTTGGTACAGCCAACAAAAGGGAAGCTGGTGTGGTTTTTGGACAAGCCAGCTGCCTCAAAACTAGACGGTTTTCAATTTTCTGAGTA G
AA sequence Show only first row Show all	>Potri.010G157200.2 pacid=42797776 polypeptide=Potri.010G157200.2.p locus=Potri.010G157200 ID=Potri.010G157200.2.v4.1 annot-version=v4.1 MAHSRVHKDRGELRIHENLDELGTDLAEYIAELSEASVKERGVFAIAISGGSLIGLMGKLCEAPYHKTVDWAKWYIFWADERVVGKTHADSNYKLAKDGL LSKVPVVPSHVNSINDSVSAEEAADDYEFHIRQLVKTRTINVSDNSDCPKFDLILLGMGPDGHVASLFPNHPMLDEKSEWVTFITDSPKPPPERITFTLP VINSASNVAVVVTGESKAEAVHLAIDDVGPDYLSLPARLVQPTKGKLVWFLDKPAASKLDGFQFSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Potri.010G157200 [exp]	0	1
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Potri.010G065200 [exp]	20.44	0.7579
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.003G143200 [exp]	23.02	0.8034
AT5G08390			Transducin/WD40 repeat-like su...		Potri.008G002300 [exp]	27.27	0.7847
AT2G40370		LAC5	laccase 5 (.1)		Potri.008G073700 [exp]	32.86	0.7722	GLAC90.1
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.008G125900 [exp]	45.89	0.7240
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G217300 [exp]	68.93	0.7157	Pt-CUL1.4
AT2G30933			Carbohydrate-binding X8 domain...		Potri.002G059600 [exp]	71.17	0.7334
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Potri.001G415300 [exp]	78.61	0.7368
AT5G10020			Leucine-rich receptor-like pro...		Potri.007G082800 [exp]	81.33	0.6936
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.015G099600 [exp]	88.72	0.7307

Compare expression of checked genes

Potri.010G157200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.