Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SIK1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69220 855 / 0 SIK1 Protein kinase superfamily protein (.1.2) AT1G53165 262 / 1e-76 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT3G15220 259 / 2e-75 Protein kinase superfamily protein (.1) AT4G10730 200 / 3e-54 Protein kinase superfamily protein (.1) AT4G24100 200 / 4e-54 Protein kinase superfamily protein (.1) AT1G79640 197 / 2e-53 Protein kinase superfamily protein (.1.2) AT5G14720 192 / 1e-51 Protein kinase superfamily protein (.1) AT1G70430 185 / 8e-50 Protein kinase superfamily protein (.1) AT3G13530 189 / 3e-49 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT1G23700 175 / 4e-47 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G116300 [exp] 265 / 2e-77 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 256 / 2e-74 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.001G349300 [exp] 202 / 5e-55 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.003G186700 [exp] 201 / 1e-54 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G084700 [exp] 201 / 3e-54 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 199 / 4e-54 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G146000 [exp] 198 / 2e-53 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.007G070100 [exp] 187 / 7e-49 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.005G094200 [exp] 184 / 1e-47 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036915 [exp] 867 / 0 AT1G69220 917 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037070 [exp] 867 / 0 AT1G69220 909 / 0.0 Protein kinase superfamily protein (.1.2) Lus10042862 [exp] 228 / 8e-64 AT3G15220 827 / 0.0 Protein kinase superfamily protein (.1) Lus10028163 [exp] 216 / 2e-59 AT1G53165 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001677 [exp] 205 / 5e-55 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 203 / 5e-55 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10014542 [exp] 202 / 1e-54 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 203 / 3e-54 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 201 / 3e-54 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 192 / 1e-51 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G157400.1 pacid=42797741 polypeptide=Potri.010G157400.1.p locus=Potri.010G157400 ID=Potri.010G157400.1.v4.1 annot-version=v4.1 ATGTGGAGAATGGATCATCCATCCCCATCTCGCCGGACCCGCACCAGCAAAACCCCTAATAAATCGGAACTCTACTCTACTGTCGTAATTCACAACTCAG ACTCCGACTCTGAACCCGAATCCAAATCCAAAACCGACGACAACAACATCTACGCTACAATGCTCTATAAAGGAGGGGGAGAAAACAACAGCAAAGACGA CGACGTAGACGTAGAAGAAGAAGACGAAGAATCTCTTCCTCCTCTCCTCAAACGCCTTCCAAAAGACTTTGGCGGTGGCGACGACGACGACGACGCTGAT TTCGGCACTATGATCGTCAAAGCCAGCCGCGGACGCCACCAGAACCAGTCATGGTCGTCGTCATCCTCGGTTGCCCCTCCAAGGAAGCCTTATAGCGCTC CTTTCACGGAATTTGAAAGCCGAATCAATGATATTGGAGATAATAGTGACGGGGATGATGATGGGAGAGGGGAGTTTGGGACATTTTTGGTGAAATCGAC GGTGGTGAGGAGGAGCGGGAGTGGTGGTGGTGGATCAACGATGGGGAAGGCGGTGGCAAGTATGCAGGCGTCCGGGGAGCTAGGGTTTGGAAAGGAGCGG AAAGGGAGTGGGTTGCTAGGAGAGGAGGGTAAACAACACCAGCAGAAGCAAAGCAAAATGTCTTCGAGTTCGATTCCAGAGAGTGTTACTAGAGAGGATC CCACTACTAAGTATGAATTGCTTAATGAACTAGGGAAGGGGTCTTACGGGGCTGTTTACAAGGCTAGGGATTTACGAAGTTCAGAGCTTGTTGCTATCAA AGTCATATCATTGACCGAAGGAGAGGAGGGATATGAAGAAATTCGCGGTGAAATTGAGATGTTGCAACAATGCAGTCATCCAAATGTTGTTCGATATCTT GGGAGCTATCAAGGTGAAGAATATCTTTGGATTGTTATGGAGTACTGTGGGGGTGGAAGTGTTTCTGACTTGATGAATGTTGCTGAGGAACCTTTGGAAG AGTATCAAATAGCATACATATGTAGAGAAGCTTTGAAGGGCCTTGCTTATCTGCATTCAATTTTCAAGGTCCATAGAGACATTAAGGGTGGTAATATTTT GTTAACTGAACAAGGTGAAGTCAAGTTGGGTGATTTTGGGGTTGCTGCACAGCTTACAAGGACCATGTCAAAGCGTAATACGTTTATTGGCACTCCACAT TGGATGGCTCCAGAAGTTATCCAAGAAAGTCGATACGATGGGAAGGTGGATGTATGGGCTCTTGGTGTTTCTGCTATTGAAATGGCAGAGGGACTTCCCC CAAGATCCACGGTGCATCCTATGAGGGTTTTGTTCATGATATCCATTGAGCCAGCCCCGATGCTTGAGGATAAAGAAAAATGGTCTCTTGTCTTCCATGA TTTTGTGGCGAAGTGCCTTACAAAGGAACCACGCTCACGTCCAATGGCATCTGAGATGCTGAAGCACAAATTTATTGATAGATGCAAAGTTGGAGCCTCT GCAATGTTGCCAAAGATTGAAAAGGCCAGGCAAATTAGGACTGCAATGTCTCTGCAGGCGCAAAATCTTGCTCCAGCTGAATCAGAACCAACTGAAGGTC CACAACTGAATGAGGTTTATGGAGACACTGTTCCGTCAAATCGACTTCCTATGGTAAATGAAGTGCATAGCTCTTCAGATGGTGTCGATATGGCCGGAGG TGACTATGGGACTTTTGTAGTTCATGGTGGAGAGGAAACAGATAAGACAGGCTTACAGACTGCATTATATGATGCGGGGGGGATCTTACAAGACCACCCA GGAAACATAGAAGGCCTTTCAGTTAGTGGCACAGGAGGCAAATCTGCTGACCCCTGGTTGGATAATGCAACAGGGGTTGCTGCAAACAATCCTTTGGTTG GAGAATCGCTTCCTGCATTGCAGACAATACAGACATCTACTCCTGAAGTTTCTGGCTATTCTGAGCAGAATCTCAAGAAAAATACCGTATCTAAAGTACA CGTTGAAGGTGGCGGCGGCCTGGGCAGTTCCACTTTGAAGAATGAAACAGTCAGCAGAAAAGCATTTGCATTGCAAGATAAGCTTTGGTCCATATATGCA GCAGGTAATACTGTGCCCATTCCATTTTTGCGGGCAACAGACATATCCCCCATTGCTCTCTTATCAGACAATGTGCTTGGAGGCATCCAGTGTGATAATA GTGGAACTGTAGCAGCAGAAGCACTTCAGGAGCTTTTTTCTGGTGATGGACCATCTAAAAAGGGCCGAAGGATACAAAACGAGATGCCACTTCCTCCAGG TGTTTACCAAAGACTGACTTCAAGTTCTACGCTGCTGAATCTGGCGCAGGCTTTAGCCTACCACAAAATGTGCTATGAAGAGATGCCACTCCAAGAGTTG CAAGCAACGCAAGAGAAACAAACCATTCAAAATCTTTGTGATACTCTTCGAACTATCCTCCGACTCTAG
AA sequence Show only first row Show all	>Potri.010G157400.1 pacid=42797741 polypeptide=Potri.010G157400.1.p locus=Potri.010G157400 ID=Potri.010G157400.1.v4.1 annot-version=v4.1 MWRMDHPSPSRRTRTSKTPNKSELYSTVVIHNSDSDSEPESKSKTDDNNIYATMLYKGGGENNSKDDDVDVEEEDEESLPPLLKRLPKDFGGGDDDDDAD FGTMIVKASRGRHQNQSWSSSSSVAPPRKPYSAPFTEFESRINDIGDNSDGDDDGRGEFGTFLVKSTVVRRSGSGGGGSTMGKAVASMQASGELGFGKER KGSGLLGEEGKQHQQKQSKMSSSSIPESVTREDPTTKYELLNELGKGSYGAVYKARDLRSSELVAIKVISLTEGEEGYEEIRGEIEMLQQCSHPNVVRYL GSYQGEEYLWIVMEYCGGGSVSDLMNVAEEPLEEYQIAYICREALKGLAYLHSIFKVHRDIKGGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTFIGTPH WMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSTVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFVAKCLTKEPRSRPMASEMLKHKFIDRCKVGAS AMLPKIEKARQIRTAMSLQAQNLAPAESEPTEGPQLNEVYGDTVPSNRLPMVNEVHSSSDGVDMAGGDYGTFVVHGGEETDKTGLQTALYDAGGILQDHP GNIEGLSVSGTGGKSADPWLDNATGVAANNPLVGESLPALQTIQTSTPEVSGYSEQNLKKNTVSKVHVEGGGGLGSSTLKNETVSRKAFALQDKLWSIYA AGNTVPIPFLRATDISPIALLSDNVLGGIQCDNSGTVAAEALQELFSGDGPSKKGRRIQNEMPLPPGVYQRLTSSSTLLNLAQALAYHKMCYEEMPLQEL QATQEKQTIQNLCDTLRTILRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69220		SIK1	Protein kinase superfamily pro...		Potri.010G157400 [exp]	0	1	SIK1.1
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Potri.003G107700 [exp]	6.24	0.7695
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	8.60	0.7499
AT5G47020			unknown protein		Potri.003G086200 [exp]	13.71	0.7351
AT1G15130			Endosomal targeting BRO1-like ...		Potri.010G116400 [exp]	13.96	0.6865
AT4G00060		MEE44	maternal effect embryo arrest ...		Potri.014G066000 [exp]	18.16	0.7313
AT5G40740			unknown protein		Potri.001G337700 [exp]	19.13	0.6400
AT1G48430			Dihydroxyacetone kinase (.1)		Potri.015G032500 [exp]	19.69	0.6201
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	20.42	0.7360
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Potri.005G026400 [exp]	24.24	0.6751
AT1G31910			GHMP kinase family protein (.1...		Potri.001G135500 [exp]	27.27	0.6727

Compare expression of checked genes

Potri.010G157400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.