Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03690 367 / 2e-130 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097100 [exp] 431 / 6e-156 AT2G03690 367 / 1e-130 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026673 [exp] 378 / 1e-134 AT2G03690 403 / 1e-144 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1) Lus10026671 [exp] 375 / 9e-134 AT2G03690 397 / 2e-142 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05019 [poplar] [flax] Coq4 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Representative CDS sequence Show only first row Show all	>Potri.010G157500.1 pacid=42797424 polypeptide=Potri.010G157500.1.p locus=Potri.010G157500 ID=Potri.010G157500.1.v4.1 annot-version=v4.1 ATGATAGGAGGAGGAAGAATCCAACTGAACGGGTGGCAACAGGCGGCCGTTGCTGTTGGTTCCGCGGTGGGTGCGTTGTTAGATCCACGAAGAGCGGATT TGATAGCGGCGCTTGGAGAAACAACCGGAAAACATGCTTTTGAAAGAGTTGTCGAAAGAATGAAGAAGAGCCCGGAAGGAAGAGCACTTCTCTTGGAGAG ACCTCGTGTCATATCTGCTCAAGTGGGGCATGCTTGGGATTTGCCAGCCAATACATTTGGTGCTGCCTATGCAAGCTTCATGGGATCCAGGAACTTTTCC CCAGATGACCGTCCACCAGTGCGATTCATGGAAACGGAAGAATTGGCATATGTTGCCATGCGGGCTCGCGAGGTTCATGATTTCTGGCACACCCTTTTTG GGCTGCCCACCAACTTGATTGGCGAGTCAGCTCTCAAGGTGATTGAATTCGAGCAAATGTACCTGCCAATGTGCCTGATGTCTGTTGTTGGAGGCACAGC TAGATTTACTGAGAAGCAGAGGAAATCTTTCTTCCAGCACTACTTCCCATGGGCCGTTCGGGCTGGCTTGCAGAGCACAGATCTCATGTGTGTGTATTAT GAGAAGCACTTTCACGAGGATTTGGAAGATGTCCGTAGAAAATGGGGGATAACTCCTGCTCCTGCTGCCCCTAATCAAGATGTGCCTTGA
AA sequence Show only first row Show all	>Potri.010G157500.1 pacid=42797424 polypeptide=Potri.010G157500.1.p locus=Potri.010G157500 ID=Potri.010G157500.1.v4.1 annot-version=v4.1 MIGGGRIQLNGWQQAAVAVGSAVGALLDPRRADLIAALGETTGKHAFERVVERMKKSPEGRALLLERPRVISAQVGHAWDLPANTFGAAYASFMGSRNFS PDDRPPVRFMETEELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFEQMYLPMCLMSVVGGTARFTEKQRKSFFQHYFPWAVRAGLQSTDLMCVYY EKHFHEDLEDVRRKWGITPAPAAPNQDVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Potri.010G157500 [exp]	0	1
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.017G057800 [exp]	11.74	0.8830
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.013G089000 [exp]	22.44	0.8529
AT2G39950			unknown protein		Potri.010G192800 [exp]	23.23	0.8370
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104300 [exp]	27.20	0.8394
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Potri.004G211700 [exp]	31.40	0.8424	ARF10.2
AT1G77680			Ribonuclease II/R family prote...		Potri.001G137401 [exp]	34.64	0.8268
AT5G43140			Peroxisomal membrane 22 kDa (M...		Potri.014G017800 [exp]	52.05	0.8566
AT5G06370			NC domain-containing protein-r...		Potri.006G203300 [exp]	60.74	0.7991
					Potri.001G033500 [exp]	71.62	0.8510
					Potri.018G011950 [exp]	75.89	0.8423

Compare expression of checked genes

Potri.010G157500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.