Plant FIBer expression Database

Potri.010G157700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03667 709 / 0 Asparagine synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026669
[exp]
784 / 0 AT2G03667 696 / 0.0 Asparagine synthase family protein (.1)
Lus10004643
[exp]
778 / 0 AT2G03667 690 / 0.0 Asparagine synthase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF00733 Asn_synthase Asparagine synthase
CL0052 NTN PF13537 GATase_7 Glutamine amidotransferase domain
Representative CDS sequence
>Potri.010G157700.2 pacid=42800216 polypeptide=Potri.010G157700.2.p locus=Potri.010G157700 ID=Potri.010G157700.2.v4.1 annot-version=v4.1
ATGTGTGGAATCGCCCTGATTGTCTCTGGGATTCGCATCGATTTATCATCATCCACCCTTCTCCAATCTCTTAACCCCGAGCCATTAGTTACAGTTTCCG
TAGATGATCTTAAAGCAGCTCTGCGGAGGCGAGGACCTGACAGCTTAGGCAGCAAGAAGATTATACTTCAGTATAATAAAAATTTGAGCTCTGTTGACGA
CCGAGAATTGGTGTCTGTAGTAACTGACGACGCTGAAATAGAAAACGACCAGTCGTTTTTGCAGAATTGCTCCAATGGCAAAGCTGGTAATTATAATCAA
CTAGGGTATTCTGTTGGCGAACTGCTATTTATCGGTGCCACATTGCAGCTGAGGGGACTGAATCCTATAATTCAGCCATTTGTTGACTCCTACGGGAATG
TACTAATTTATAACGGTGAAATATTTGGAGGAATTCATGTGGAGAGTGATAGAAATGATGGTGAAGTTCTAATGCAAACTCTAGGAAATTGCTGCTCTTG
TGGTTCCAATGGGCACACAGGCCCTTGCTCTGCTGCTGGACATGGGTGTAGTTCTGTTCCGAATGTTTTTTCAACTATCAAGGGGCCGTGGGCTATTATC
TATTGGCAGGAGAGTTCAAGAACCTTGTGGTTTGGTCGAGATGCATTTGGTAGGCGGAGCCTGGTTGTTCATTGGCCTACTGTGAAGGATTCTCGGTTTC
TGATATCTTCTGTATCGCCATTTTCCTCTGTTGATCAGAGTTCTGATTTTGAAGTTGAAAATGGAACTCACCACAATTTTTGGGAGGAGCTTTCATGTGG
GATATACAGCTTATCAATGGATGCTTCAAAGCTGGATGGATATCTTGTTGGTGAAGTAAAAAACCATGAATGGGGTAATGCCATGCTATTGGAACTGATT
AAATGGGAGAGAGTTTCTTTCAATCCAAAACCCAATGAGTTACATGGTTCACTTAACGGGACTCTAGAGGGACAACATCACATGTATCCAGCTTCATCAG
ACATAATGACATTTGAATCAGGGCCAAATCAAACAATGATTTCATTGCCTGCTCATAATGTGTTAAGTGCTCTAAGAAAATCTGTGATGCTGCGCGCTTC
ACAACACAGAATCTTCGAGGCAGGAAGATGTTATAGTAGACGAGAAGAACATGTTCCAGTGGCAGTCTTGTTTTCTGGTGGGCTTGATTCTATGATACTT
TCTGCATTGTTGGATGAGTGTCTAGATCCCAGCTATGGGATTGACTTACTTAATGTGAGCTTTGATGGTCAGTCTGCTCCTGATAGAATCTCTGCCAAGG
CAGGAGTGAAGGAACTGAGAAGAATTGCACCACTGAGAAGGTGGAAGCTTGTAGAGATTGATTCAGACTTGTCGAAATTGACCTTGGAAATGAAGCACGT
CATGTCGCTTATTAACCCTGCAAACACGTATATGGACCTGAACATAGGGGTTGCTTTGTGGTTGGCTGCAAGTGGTGATGGTTGGGTCTCTGAAAGACCT
AGCACTAACAGTGACGAGAATCAACAACGCCTGAGTTACAAGTCCGAGGCTAGGATTGTCCTAGTTGGTTCGGGTGCTGATGAGCAGTGTGCTGGTTATG
GAAGGCATAGAACAAAATATAGATGTGGCGGTTGGCATGGGCTTAATGAGGAAATGAAGTTGGATATGCAGAGAATATGGAAACGAAATATGGGGAGAGA
TGACAGATGCATTGCTGATAATGGAAAGGAGGCTAGATTTCCTTTCTTGGATGAAGATGTCATTAGGGTGCTTCTTGACATCCCTTTGTGGGAGGTTACT
AACCTGGATCAACCTAGTGGAACAGGTGATAAGAAGATCCTCAGGGAGGTGGCACAAATGCTTGGTTTACATGAGGCAGCTGTTCTCCCTAAAAGAGCAA
TCCAGTTTGGTTCAAGAATTGCAAGGGAATCAAATCGAAAAAACTTTGGAAGTAATCGTGCAGCAAACCAAGCATCTGCAGGAAGTGTAATGATTAACAG
GTCGTGA
AA sequence
>Potri.010G157700.2 pacid=42800216 polypeptide=Potri.010G157700.2.p locus=Potri.010G157700 ID=Potri.010G157700.2.v4.1 annot-version=v4.1
MCGIALIVSGIRIDLSSSTLLQSLNPEPLVTVSVDDLKAALRRRGPDSLGSKKIILQYNKNLSSVDDRELVSVVTDDAEIENDQSFLQNCSNGKAGNYNQ
LGYSVGELLFIGATLQLRGLNPIIQPFVDSYGNVLIYNGEIFGGIHVESDRNDGEVLMQTLGNCCSCGSNGHTGPCSAAGHGCSSVPNVFSTIKGPWAII
YWQESSRTLWFGRDAFGRRSLVVHWPTVKDSRFLISSVSPFSSVDQSSDFEVENGTHHNFWEELSCGIYSLSMDASKLDGYLVGEVKNHEWGNAMLLELI
KWERVSFNPKPNELHGSLNGTLEGQHHMYPASSDIMTFESGPNQTMISLPAHNVLSALRKSVMLRASQHRIFEAGRCYSRREEHVPVAVLFSGGLDSMIL
SALLDECLDPSYGIDLLNVSFDGQSAPDRISAKAGVKELRRIAPLRRWKLVEIDSDLSKLTLEMKHVMSLINPANTYMDLNIGVALWLAASGDGWVSERP
STNSDENQQRLSYKSEARIVLVGSGADEQCAGYGRHRTKYRCGGWHGLNEEMKLDMQRIWKRNMGRDDRCIADNGKEARFPFLDEDVIRVLLDIPLWEVT
NLDQPSGTGDKKILREVAQMLGLHEAAVLPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVMINRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G03667 Asparagine synthase family pro... Potri.010G157700
[exp]
0 1
AT3G60500 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuc... Potri.009G047500
[exp]
2.00 0.8058
AT3G07660 Kinase-related protein of unkn... Potri.011G079800
[exp]
2.82 0.8031
AT1G63810 unknown protein Potri.007G024600
[exp]
7.34 0.7728
AT4G04790 Tetratricopeptide repeat (TPR)... Potri.001G417400
[exp]
10.90 0.6887
AT5G11470 bromo-adjacent homology (BAH) ... Potri.006G244000
[exp]
11.22 0.7139
AT3G09720 P-loop containing nucleoside t... Potri.019G065300
[exp]
14.73 0.7267
AT2G01730 ATCPSF73-II, ED... embryo sac development arrest ... Potri.010G106200
[exp]
16.12 0.7059 ATCPSF73.1
AT1G18450 ATARP4 actin-related protein 4 (.1) Potri.015G053100
[exp]
20.00 0.6812 Pt-ARP4.1
AT1G28090 Polynucleotide adenylyltransfe... Potri.003G164400
[exp]
27.05 0.7010
AT5G27400 S-adenosyl-L-methionine-depend... Potri.005G039000
[exp]
37.49 0.6860

Potri.010G157700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.