Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13740 229 / 2e-72 AFP2 ABI five binding protein 2 (.1) AT1G69260 198 / 1e-60 AFP1 ABI five binding protein (.1) AT3G29575 137 / 1e-38 AFP3 ABI five binding protein 3 (.1.3.4) AT3G02140 100 / 1e-23 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1) AT3G07250 93 / 2e-20 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT4G28910 65 / 2e-11 NINJA novel interactor of JAZ (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096500 [exp] 490 / 5e-175 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 195 / 3e-59 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 181 / 9e-54 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1) Potri.006G162900 [exp] 66 / 1e-11 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.018G085100 [exp] 63 / 1e-10 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3) Potri.005G176466 [exp] 41 / 0.0002 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004645 [exp] 263 / 4e-86 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10026667 [exp] 240 / 6e-77 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10036898 [exp] 168 / 4e-50 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10037084 [exp] 158 / 3e-46 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1) Lus10003145 [exp] 110 / 3e-27 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4) Lus10022764 [exp] 110 / 4e-27 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10043236 [exp] 62 / 2e-10 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10011116 [exp] 61 / 5e-10 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07897 [poplar] [flax] EAR Ethylene-responsive binding factor-associated repression PF16136 [poplar] [flax] NINJA_B Putative nuclear localisation signal
Representative CDS sequence Show only first row Show all	>Potri.010G157900.2 pacid=42798057 polypeptide=Potri.010G157900.2.p locus=Potri.010G157900 ID=Potri.010G157900.2.v4.1 annot-version=v4.1 ATGGGAGAAGCAAACGCGAATAAAAATAGAAGCAGCAGTAGTGGAAGTAGCAGAGCAATGGAGAGTCTTTCTTTGGAAATAAACAGGTATCCAAGAGATC TGGTACAAAGACTCATTTCAAGTGATGCACAGCAATATAAAACAGCAACAAGTGAAGGAGAAGAAGCAGAGGAGATTGAGTTAAATCTTGGGTTATCACT TGGTGGAAGATTTGGGGTTGATAAGACTTCAGAGAAACTAACGAGATCATCGTCTATAGCTGGTTCAATACCATTGTTGAGAGACCATGATGCTTTAAGT ACACCACCTGTATCTTATCCTTTTCTCATAAGGACTTCTTCTTTGCCTACTGAAACGGAGGAAGAGTGGAGGAAGAGGAAGGAAAATCAGAGTTTAAGGA GAATGGAAGCCAAGAGAAGGCGAAGTGAAAAGCAAAAGAATTTGAGAGGAGAGTTGAATTTGGAGGAAGTTAAATTGAATAAAGGGAACTGGGTGCCAAC GTGGGCTAATAAGCAGAGTGGTGTTGTGAATAGGAGTAGTAATTTGGAAGGTCAACAGCAGCAACAAGGGTCACGAGGATCTGTGGAGTCTCTAGGAGGG AGCTCTTCTGGGTTGTCAGAAATGGAGAGCAAGCCTGTTCAAGGATCAAGCAGTGGTGGAGAAGCACGAAGTCCTGCGAGTAATCAATCCTTGCAGGAAC GAAGCAGTCAAGAAGCTGTGGGTTCTTCTGGGACAAAGAAAATTGAAAATGCGTGCAGAGCCTCCAGAACAGAACCGGAGAATCTATCCAAGAAGCTTGA TTCTGCAGAAAATAGAGGGAGGGAAATTGGGACCAATGCAATGGAAGATATGCCTTGTGTGTTTACTAAAGGAGATGGTCCTAATGGGAGAAGAGTGGAT GGCATTCTGTACAAGTATGGTAAGGGAGAGGAAGTAAGGATAATGTGCGTATGCCACGGCAGCTTTCACTCCCCCGCAGAGTTCGTGAAGCATGCAGGTG GCAGTGATGTTGATCACCCTCTTAGGCATATAGTGGTAAACCCTTCCGGTCCGTCCTTTGAATAA
AA sequence Show only first row Show all	>Potri.010G157900.2 pacid=42798057 polypeptide=Potri.010G157900.2.p locus=Potri.010G157900 ID=Potri.010G157900.2.v4.1 annot-version=v4.1 MGEANANKNRSSSSGSSRAMESLSLEINRYPRDLVQRLISSDAQQYKTATSEGEEAEEIELNLGLSLGGRFGVDKTSEKLTRSSSIAGSIPLLRDHDALS TPPVSYPFLIRTSSLPTETEEEWRKRKENQSLRRMEAKRRRSEKQKNLRGELNLEEVKLNKGNWVPTWANKQSGVVNRSSNLEGQQQQQGSRGSVESLGG SSSGLSEMESKPVQGSSSGGEARSPASNQSLQERSSQEAVGSSGTKKIENACRASRTEPENLSKKLDSAENRGREIGTNAMEDMPCVFTKGDGPNGRRVD GILYKYGKGEEVRIMCVCHGSFHSPAEFVKHAGGSDVDHPLRHIVVNPSGPSFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.010G157900 [exp]	0	1
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	2.00	0.8774	TGA3.1
AT5G17300	MYB	RVE1	REVEILLE 1, Homeodomain-like s...		Potri.004G074300 [exp]	4.00	0.8183
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.015G065400 [exp]	4.89	0.8672
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.011G118800 [exp]	9.16	0.8212
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	13.41	0.8075
AT3G15180			ARM repeat superfamily protein...		Potri.001G396500 [exp]	14.07	0.7834
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.012G081600 [exp]	19.36	0.7946
					Potri.003G139000 [exp]	22.24	0.8017
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.015G084000 [exp]	23.66	0.8050
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Potri.002G074700 [exp]	27.65	0.7174

Compare expression of checked genes

Potri.010G157900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.