Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13750 968 / 0 Purple acid phosphatases superfamily protein (.1) AT5G50400 877 / 0 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 845 / 0 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13900 216 / 1e-61 Purple acid phosphatases superfamily protein (.1) AT2G03450 214 / 5e-61 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT3G52810 98 / 2e-21 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52780 95 / 2e-20 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT5G34850 92 / 1e-19 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT3G52820 91 / 4e-19 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT1G56360 89 / 1e-18 PAP6, ATPAP6 purple acid phosphatase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158400 [exp] 1045 / 0 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 1013 / 0 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.012G097400 [exp] 905 / 0 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.015G095900 [exp] 881 / 0 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.003G202200 [exp] 342 / 3e-109 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 335 / 8e-107 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G160500 [exp] 218 / 2e-62 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.001G423700 [exp] 107 / 8e-25 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.006G063700 [exp] 103 / 2e-23 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037079 [exp] 1005 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036904 [exp] 1002 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 823 / 0 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037080 [exp] 731 / 0 AT5G50400 605 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036903 [exp] 586 / 0 AT1G13750 508 / 7e-177 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 347 / 3e-111 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 325 / 4e-103 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10024179 [exp] 317 / 9e-100 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019771 [exp] 315 / 3e-99 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 279 / 9e-82 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G158250.3 pacid=42799727 polypeptide=Potri.010G158250.3.p locus=Potri.010G158250 ID=Potri.010G158250.3.v4.1 annot-version=v4.1 ATGATGAGAGGATTAAGGTTGATGATCTTTATTCCATCTTTATTAATACTTACAAATCTTCAAGAGACAAGCTCACATGGAGATCATCCTCTCTCGAGAA TAGCTATACATGAAGCAACTCTTGCCCTTACTCCTCTTGCCTATGTTGAAGCCTCTCCTTCCATTCTTGGACTGACTACTGGACAGAATTCAGAGTGGGT GACTGTTGAGTATAGTACTCCAATCCCGTCAGTTGATGATTGGATTGGAGTATTTTCTCCTGCCAATTTCAGTGCTTCCACCTGCCCCTCAGAAAATCCA AGAGTTTATCCTCCACTACTGTGTTCTGCACCTATTAAGTTTCAATACGCCAACTACTCTAGTCCTCAGTATAAGGATACAGGAAAAGGATCACTGAAGC TGCAGATGATCAACCAAAGATCGGACTTCTCTTTTGCACTATTTACTGGTGGTTTTTTGAATCCGAAGCTGGTTGCTGTCTCGAATAAAGTTGCTTTCTC AAATCCAAATGCACCGGCCTATCCACGCTTGGCGCAAGGAAAAAAATGGGATGAAATGACTGTAACATGGACAAGTGGATATGGGATCAGTGAAGCAGAA CCTTTTGTTGAATGGGGTCCTAAAGGAGGGGTTCCTATCCATTCCCCAGCTGGGACACTGACTTTTGAACGTAGCAGCATGTGTGGTGCACCAGCAAGGA CAGTGGGATGGCGTGATCCTGGGTATATACACACTAGCTTTTTGAAGGAGTTGTGGCCCAACGCAGTGTATGCATACAAGCTGGGACACAGATTGTTCAA TTGCACATATATTTGGAGTAAAGAATACCAGTTTAAAGTACCCCCTTATCCTGGTCAAGATTCTGTACAACGTGTAGTCATTTTTGGTGACATGGGAAAG GGTGAAGTAGATGGTTCCAGTGAATATAATGATTTTCAGCCTGGCTCTCTAAACACTACCAAGCAACTCGTTCAAGACCTGAAGAACATTGATATTGTCT TCCACATTGGGGATATATGTTATGCAAATGGATATTTGTCACAATGGGACCAATTTACTGCACAAATTGAGCCAATTGCATCATCTGTCCCTTACATGAT TGCTAGTGGGAACCATGAGCGTGACTGGCCAGGGACTGGATCCTTCTATGGGAACATGGATTCTGGAGGAGAATGTGGTGTGTTGGCTCAGACTATGTTC TATGCGCCAACAGAGAACAGGGAAAAGTTCTGGTATTCCACTGGCTATGGCATGTTCCGGTTCTGCATAGCAGACACAGAACATGATTGGAGGGAGGGAA CAGAGCAGTACAAGTTTATAGAGCATTGTCTTGCATCAGTTGATAGACATAAGCAACCATGGCTGATTTTCCTTGCACATCGAGTACTAGGGTATTCTTC TGATTTCTCTTATGCTATTGAAGGATCTTTTGAAGAACCGATGGGAAGGGAAAGCCTTCAAAAACTGTGGCAGAAATACAAGGTTGACATTGCAATGTTT GGTCATGTGCACAACTATGAAAGGACATGCCCCATATATCAGAATATATGCACCAGTAAAGAGAAGCACTCCTATAAAGGCAACCTGAATGGGACGATAC ATGTGGCTGCTGGTGGTGCAGGAGCGAGCCTTTCACCATTCACCACCCTCCAAACAGCCTGGAGTTTGTATAAAGACTATGATCATGGCTTTGTAAAACT CACAGCTTTTGACCATTCCAATCTGTTGTTCGAGTACAAGAAGAGCAGGGATGGAAAGGTTTATGACTCTTTCACTATATCCCGCGATTATAGGGACATC TTGGCCTGCACTGTGGGTAGCTGTCCAAGTACGACACTAGCATCTTGA
AA sequence Show only first row Show all	>Potri.010G158250.3 pacid=42799727 polypeptide=Potri.010G158250.3.p locus=Potri.010G158250 ID=Potri.010G158250.3.v4.1 annot-version=v4.1 MMRGLRLMIFIPSLLILTNLQETSSHGDHPLSRIAIHEATLALTPLAYVEASPSILGLTTGQNSEWVTVEYSTPIPSVDDWIGVFSPANFSASTCPSENP RVYPPLLCSAPIKFQYANYSSPQYKDTGKGSLKLQMINQRSDFSFALFTGGFLNPKLVAVSNKVAFSNPNAPAYPRLAQGKKWDEMTVTWTSGYGISEAE PFVEWGPKGGVPIHSPAGTLTFERSSMCGAPARTVGWRDPGYIHTSFLKELWPNAVYAYKLGHRLFNCTYIWSKEYQFKVPPYPGQDSVQRVVIFGDMGK GEVDGSSEYNDFQPGSLNTTKQLVQDLKNIDIVFHIGDICYANGYLSQWDQFTAQIEPIASSVPYMIASGNHERDWPGTGSFYGNMDSGGECGVLAQTMF YAPTENREKFWYSTGYGMFRFCIADTEHDWREGTEQYKFIEHCLASVDRHKQPWLIFLAHRVLGYSSDFSYAIEGSFEEPMGRESLQKLWQKYKVDIAMF GHVHNYERTCPIYQNICTSKEKHSYKGNLNGTIHVAAGGAGASLSPFTTLQTAWSLYKDYDHGFVKLTAFDHSNLLFEYKKSRDGKVYDSFTISRDYRDI LACTVGSCPSTTLAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13750			Purple acid phosphatases super...		Potri.010G158250 [exp]	0	1
AT5G55210			unknown protein		Potri.001G356400 [exp]	5.19	0.9300
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Potri.006G044700 [exp]	6.63	0.9490
					Potri.003G054001 [exp]	7.41	0.9131
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.008G022000 [exp]	10.00	0.9091
AT4G31390			Protein kinase superfamily pro...		Potri.006G275600 [exp]	12.96	0.9328
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Potri.012G109800 [exp]	18.02	0.9197
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G140750 [exp]	19.89	0.9239
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.002G006200 [exp]	21.54	0.8837
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	23.66	0.9119	Pt-NAP8.1
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Potri.004G163600 [exp]	24.49	0.8994

Compare expression of checked genes

Potri.010G158250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.