Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13750 962 / 0 Purple acid phosphatases superfamily protein (.1) AT5G50400 900 / 0 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 872 / 0 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13900 224 / 1e-64 Purple acid phosphatases superfamily protein (.1) AT2G03450 216 / 1e-61 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT3G52780 103 / 1e-23 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52810 99 / 5e-22 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT4G13700 96 / 6e-21 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52820 95 / 2e-20 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G07130 91 / 6e-19 ATPAP15, PAP15 purple acid phosphatase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096000 [exp] 1165 / 0 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158250 [exp] 1045 / 0 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 937 / 0 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 932 / 0 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 330 / 1e-104 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.003G202200 [exp] 327 / 2e-103 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G160500 [exp] 220 / 5e-63 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.001G423700 [exp] 102 / 4e-23 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.017G055900 [exp] 103 / 6e-23 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036904 [exp] 1070 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037079 [exp] 1060 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 865 / 0 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037080 [exp] 683 / 0 AT5G50400 605 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036903 [exp] 545 / 0 AT1G13750 508 / 7e-177 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 322 / 9e-102 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 304 / 5e-95 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019771 [exp] 295 / 2e-91 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 291 / 1e-89 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 253 / 1e-72 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G158400.6 pacid=42798740 polypeptide=Potri.010G158400.6.p locus=Potri.010G158400 ID=Potri.010G158400.6.v4.1 annot-version=v4.1 ATGATGAGAGGATTAGAACTTGTCTTCTTTGCTATTCTACTGGTTCTTGCAACTCTTCAAGTGGCGAATTCACATGGAGAGCAACCTCTTTCAAGAATCG CTGTTCATAACACAAGACTTCAACTTTTTGAAAATGCTGATATTAAAGCCTCCCCTTCAGTTCTTGGACTCAAGGGGCAAAATTCTGAGTGGGTTACATT GGAGTACGCTTCTCCAAACCCATCAAATGACGACTGGATAGGAGTGTTTTCTCCTGCTAATTTCAGTGCCTCCACCTGCAACCCTGATGATGGCTCAAAA CAAGCTCCTCCATTTTTGTGTACTGCACCTATTAAGTATCAGTATGCAAACTACAGTAGTCCAGGATACAGAAAGGAGGGAAAGGGGTCGTTGAGGCTTC AGTTAATTAACCAGAGATCAGATTTCTCTTTTGTGCTTTTTTCTGGAGGTTTAACGAATCCCAAGGTGGTGGCAGTGTCAAATAAAGTTGCTTTCACCAA TCCAAATGCGCCAGTTTACCCACGCTTAGCACAAGGAAAGATATGGAATGAAATGACTGTAACATGGACAAGCGGGTACGGGATCAATGAGGCAGAACCC TTTGTTGAATGGGGTCGAAAAGATGGTGATCATATGCGATCCCCAGCTGGGACACTGACTTTTAATCGTAATAGCATGTGTGGTGCACCAGCAAGGACAG TTGGGTGGCGTGATCCTGGATTTATACACACAAGTTTTCTGAAGGAGTTATGGCCGAATTCTGTGTATACATACAAGCTTGGGCATAAATTATTCAACGG TACATATGTTTGGAGTCAAGTGTACCAGTTTAGAGCATCTCCATACCCAGGTCAAAGTTCTGTACAGCGTGTTGTTATTTTTGGAGACATGGGAAAGGAT GAAGCTGATGGCTCCAATGAATATAACAACTTCCAGCGTGGCTCCCTTAACACTACCAAGCAGCTTATTCAAGACTTGAAAAACATTGATATAGTCTTCC ACATTGGTGATATATGCTATGCAAATGGATACCTTTCTCAGTGGGACCAGTTCACTGCACAGGTTGAGCCAATTGCATCAACTGTTCCTTACATGATTGC AAGTGGTAACCATGAACGTGACTGGCCTGGAACAGGATCCTTCTATGGGAACTCAGATTCTGGAGGAGAATGTGGTGTATTGGCTGAGACAATGTTCTAT GTCCCTGCTGAGAACAGGGCTAAATTCTGGTATTCCACTGACTATGGCATGTTCAGATTTTGCATAGCTGACACAGAACATGATTGGAGGGAGGGAACTG AACAATACAAATTTATTGAGCATTGCCTTGCTTCTGCTGATAGACAAAAGCAACCATGGCTAATTTTCCTTGCACATCGGGTGCTAGGTTATTCATCTGC TACCTGGTATGCTGATCAAGGATCATTTGAGGAACCTATGGGAAGGGAGAGCCTTCAAAAGCTTTGGCAGAAGTACAAGGTTGATATAGCCATGTACGGC CATGTTCACAATTATGAAAGGACATGTCCCATTTACCAGAATATTTGCACGAGCAAAGAGAAATTCTTCTACAAGGGCACCTTAAATGGAACAATACATG TGGTTGCGGGTGGAGGAGGAGCAAGCCTTGCAGATTTCACACCCATCAATACTACATGGAGTTACTTTAAAGACCATGATTACGGATTTGTTAAACTTAC AGCTTTTGACCATTCTAACCTGTTGTTTGAGTACAAGAAAAGCAGGGATGGAGAGGTTTATGACTCTTTCAAGATATCCCGGGACTACAGAGACATCTTG GCCTGCACGGTGGATAGCTGTCCAAGCATGACCCTAGCATCTTGA
AA sequence Show only first row Show all	>Potri.010G158400.6 pacid=42798740 polypeptide=Potri.010G158400.6.p locus=Potri.010G158400 ID=Potri.010G158400.6.v4.1 annot-version=v4.1 MMRGLELVFFAILLVLATLQVANSHGEQPLSRIAVHNTRLQLFENADIKASPSVLGLKGQNSEWVTLEYASPNPSNDDWIGVFSPANFSASTCNPDDGSK QAPPFLCTAPIKYQYANYSSPGYRKEGKGSLRLQLINQRSDFSFVLFSGGLTNPKVVAVSNKVAFTNPNAPVYPRLAQGKIWNEMTVTWTSGYGINEAEP FVEWGRKDGDHMRSPAGTLTFNRNSMCGAPARTVGWRDPGFIHTSFLKELWPNSVYTYKLGHKLFNGTYVWSQVYQFRASPYPGQSSVQRVVIFGDMGKD EADGSNEYNNFQRGSLNTTKQLIQDLKNIDIVFHIGDICYANGYLSQWDQFTAQVEPIASTVPYMIASGNHERDWPGTGSFYGNSDSGGECGVLAETMFY VPAENRAKFWYSTDYGMFRFCIADTEHDWREGTEQYKFIEHCLASADRQKQPWLIFLAHRVLGYSSATWYADQGSFEEPMGRESLQKLWQKYKVDIAMYG HVHNYERTCPIYQNICTSKEKFFYKGTLNGTIHVVAGGGGASLADFTPINTTWSYFKDHDYGFVKLTAFDHSNLLFEYKKSRDGEVYDSFKISRDYRDIL ACTVDSCPSMTLAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13750			Purple acid phosphatases super...		Potri.010G158400 [exp]	0	1
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.007G000300 [exp]	4.89	0.8107
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G121500 [exp]	6.48	0.8122
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.003G088900 [exp]	10.95	0.7994
AT1G10380			Putative membrane lipoprotein ...		Potri.008G095900 [exp]	11.22	0.7637
AT1G71090			Auxin efflux carrier family pr...		Potri.008G127700 [exp]	11.48	0.8118
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Potri.005G083300 [exp]	15.81	0.7506
AT3G06130			Heavy metal transport/detoxifi...		Potri.008G202800 [exp]	18.00	0.7959
AT4G34880			Amidase family protein (.1)		Potri.009G130500 [exp]	18.97	0.7134
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116050 [exp]	20.78	0.7999
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.008G140500 [exp]	22.09	0.7756

Compare expression of checked genes

Potri.010G158400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.