Plant FIBer expression Database

Potri.010G158700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03510 557 / 0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004648
[exp]
571 / 0 AT2G03510 541 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Lus10026664
[exp]
571 / 0 AT2G03510 537 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Lus10036912
[exp]
522 / 0 AT2G03510 503 / 2e-180 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Lus10037073
[exp]
362 / 3e-125 AT2G03510 354 / 1e-122 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Lus10037074
[exp]
102 / 1e-23 AT2G03590 575 / 0.0 ureide permease 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0433 SPFH PF01145 Band_7 SPFH domain / Band 7 family
Representative CDS sequence
>Potri.010G158700.8 pacid=42799811 polypeptide=Potri.010G158700.8.p locus=Potri.010G158700 ID=Potri.010G158700.8.v4.1 annot-version=v4.1
ATGGATCCACAGCAACAAAGAGCAGCAATCCCCCAGCGCGGCCCTCCTCCTCAAACCGGCGATTTCTCTCCAATTCTCACTGTCTTCCTCTCCTTCATCG
CCATCTTCGCCTTGATAGTGATTCCATCGTCATCCAATATTAAGAATAGTTTATCCATCTTGCACCAAGTCCCAGAAGGTCATGTTGGGGTATATTGGAG
AGGAGGTGCGCTTCTACAGACAGTTACAGATCCAGGTTTTCATCTAAAGTTGCCTCTGATAACCCAATATGAGCCTGTTCAGGTGACACTTCAAACAGAT
CAGGTTAGGGATATTCCATGTGGTACTAAAGGAGGAGTCATGATTAACTTTGAGAAAATCGAGGTTGTCAATCGGCTTGGTAAGGAATATGTATATGAGA
CACTACTGAACTATGGCGTGCAGTATGACCACACATGGATATATGACAAGATTCATCATGAAATCAATCAGTTCTGCAGCTCTCATTCTCTTCAACAAGT
TTATATTGATGTTTTTGATCAGATTGATGAAAAGATGAAAGATGCTCTTCAAGGCGATTGCACACGTTATGCTCCTGGTATTGAAATAATAAGTGTGCGT
GTCACAAAGCCTACCATTCCAGAAAGCATAAGAAAGAATTTCGAACAGATGGAAGAAGAACGCACTAAGGTCTTAATTTCTATTGAGAGACAGAAATTTG
TTGAGAAAGAGGCAGAGACAACAAAGAAGATGGCTATCAGTGAGGCTGAAAAGAATGCCAATGTGAGCAAGATTCTCATGGAACAGAAGTTGATGGAGAA
AGACAGTGCAAGGCGGGAGCAAGAGATTGAGAATCAAATGTATATGGCTCATGAAAAGAGCCTGGCAGATGCTGCATTCTACCGCGTCTTGAAAGAAGCT
GAAGCAAACAAGTTGAAGCTTACTCCCCAGTTTCTCGAGCTGAAATTCATTGAAGCCATTGCTGATAATACAAAAATTTTCTTCGGGGACAAGGTGCCGA
ACATGGTTCTTGATCAGAGACTGCTGGGAAATTTTCTGCAAGGGATGTCTGGAGGGATGGCTAGAGAAGTGGTCTCAGAAGAAGTGTGA
AA sequence
>Potri.010G158700.8 pacid=42799811 polypeptide=Potri.010G158700.8.p locus=Potri.010G158700 ID=Potri.010G158700.8.v4.1 annot-version=v4.1
MDPQQQRAAIPQRGPPPQTGDFSPILTVFLSFIAIFALIVIPSSSNIKNSLSILHQVPEGHVGVYWRGGALLQTVTDPGFHLKLPLITQYEPVQVTLQTD
QVRDIPCGTKGGVMINFEKIEVVNRLGKEYVYETLLNYGVQYDHTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQGDCTRYAPGIEIISVR
VTKPTIPESIRKNFEQMEEERTKVLISIERQKFVEKEAETTKKMAISEAEKNANVSKILMEQKLMEKDSARREQEIENQMYMAHEKSLADAAFYRVLKEA
EANKLKLTPQFLELKFIEAIADNTKIFFGDKVPNMVLDQRLLGNFLQGMSGGMAREVVSEEV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G03510 SPFH/Band 7/PHB domain-contain... Potri.010G158700
[exp]
0 1
AT1G09000 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NP... Potri.005G033400
[exp]
4.58 0.8897 Pt-ANP1.2
AT3G55005 TON1B tonneau 1b (TON1b) (.1) Potri.008G046000
[exp]
5.47 0.8695 Pt-TON1.2
AT5G05080 ATUBC22, UBC22 ubiquitin-conjugating enzyme 2... Potri.006G026900
[exp]
9.89 0.8817
AT2G05990 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDU... Potri.003G212700
[exp]
10.39 0.8571 Pt-MOD1.2
AT5G57410 Afadin/alpha-actinin-binding p... Potri.018G092000
[exp]
18.76 0.8429
AT2G07050 CAS1 cycloartenol synthase 1 (.1) Potri.006G079300
[exp]
19.59 0.8672 CAS.3
AT3G10220 EMB2804 EMBRYO DEFECTIVE 2804, tubulin... Potri.006G041400
[exp]
22.91 0.8792
AT1G78300 14-3-3OMEGA, GF... 14-3-3 PROTEIN G-BOX FACTOR14 ... Potri.002G099800
[exp]
28.77 0.8689 Pt-CHI.3
AT5G48020 2-oxoglutarate (2OG) and Fe(II... Potri.001G271100
[exp]
28.84 0.8700
AT1G78870 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 1... Potri.011G111400
[exp]
30.39 0.8674

Potri.010G158700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.