Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13820 489 / 3e-175 alpha/beta-Hydrolases superfamily protein (.1) AT5G39220 425 / 7e-150 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 85 / 3e-18 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G09430 67 / 2e-12 alpha/beta-Hydrolases superfamily protein (.1) AT5G19850 62 / 1e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 62 / 3e-10 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 60 / 4e-10 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 55 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 53 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 53 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120000 [exp] 461 / 7e-164 AT5G39220 433 / 9e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G093500 [exp] 457 / 5e-162 AT5G39220 435 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 91 / 3e-20 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G313100 [exp] 63 / 5e-11 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G129500 [exp] 58 / 4e-09 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.003G219700 [exp] 56 / 2e-08 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059400 [exp] 55 / 5e-08 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 54 / 5e-08 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 52 / 4e-07 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036913 [exp] 495 / 2e-177 AT1G13820 466 / 5e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10037072 [exp] 400 / 4e-141 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10032977 [exp] 400 / 1e-136 AT5G39220 366 / 2e-123 alpha/beta-Hydrolases superfamily protein (.1) Lus10028315 [exp] 87 / 5e-19 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 66 / 6e-12 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 65 / 4e-11 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10020926 [exp] 56 / 1e-08 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 52 / 2e-07 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 52 / 3e-07 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 51 / 4e-07 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.010G158800.1 pacid=42800266 polypeptide=Potri.010G158800.1.p locus=Potri.010G158800 ID=Potri.010G158800.1.v4.1 annot-version=v4.1 ATGCTCACCCTCACAGCCAGCCCTGCATTAGTGCCTACAAAACGCAGAGCCCATGTGAAACTCTTTACAGTTCAGGGTAGCAATTTCCCTTCTTTTCTAC CCAAAGAGGTTGAGAATATCAAAGACCCATTTGCAAGAAGGCTTGCTACCAGAATTGAGAGGCTGCCAGTAAGCGTGGGGTTTGCAGACAGAAGTATCAT GAGTAGTTGTGTGAAGCCTTTGATACAGAGTGAGGGAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGTTCCTGTTTAGAATGGAGATACACATTTCCA CTGCTAGAGGAGGCTGGTTTAGAGACTTGGGCTGTCGATGTTCTTGGCTGGGGTTTCTCTGATTTGGAGAGACTTCCATCATGTGATGTTGCATCTAAGC GTGATCACTTGTATCAGCTCTGGAAATCCTATATCAGAAGACCCATCATATTGATTGGACCAAGCCTTGGTGCTGCTGTTGCAATTGACTTTGCTGTCAA TCATCCTGAAGCAGTAGAAAAGTTAGTGTTGATTGACGCGAGTGTATATGCTGAAGACACAGGGAACCTTGCAAAGTTACCTAGAGCTATAGCATATGCT GGGGTTTATCTACTGAAGAGCACCCCCTTGCGCTTATATGCTAATCTTATCGCATTCAATAGTCTACCATTAAACACCAGCATAGACTGGATGAACGTGG GCAGATTGCATTGTCTATATCCTTGGTGGGAGGATGCAACTGTAAATTTTATGAATACTGGTGGTTATAATGTCAGTGCCCAGATAAAAAAGGTCAAGCA GAAGACCCTTATCATTTGGGGTGAGGATGATCAAATCATTAGCAACAAGTTGGCTGTGAGATTGCACTGTGAACTGCCAGATGCTGTCATACGCCAAATT CCAGATTGTGGCCACCTTCCTCATGTGGAAAAGCCCAACTCTGTTGCCAAATTGATTCTGGATTTTGTGGGAGAAGATAGCAATAAAGAAGCTCAAAGTG TTTCTCAGGTTTGA
AA sequence Show only first row Show all	>Potri.010G158800.1 pacid=42800266 polypeptide=Potri.010G158800.1.p locus=Potri.010G158800 ID=Potri.010G158800.1.v4.1 annot-version=v4.1 MLTLTASPALVPTKRRAHVKLFTVQGSNFPSFLPKEVENIKDPFARRLATRIERLPVSVGFADRSIMSSCVKPLIQSEGSPVVLLHGFDSSCLEWRYTFP LLEEAGLETWAVDVLGWGFSDLERLPSCDVASKRDHLYQLWKSYIRRPIILIGPSLGAAVAIDFAVNHPEAVEKLVLIDASVYAEDTGNLAKLPRAIAYA GVYLLKSTPLRLYANLIAFNSLPLNTSIDWMNVGRLHCLYPWWEDATVNFMNTGGYNVSAQIKKVKQKTLIIWGEDDQIISNKLAVRLHCELPDAVIRQI PDCGHLPHVEKPNSVAKLILDFVGEDSNKEAQSVSQV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13820			alpha/beta-Hydrolases superfam...		Potri.010G158800 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.014G066700 [exp]	1.00	0.9776	Pt-AFO.1
AT5G04440			Protein of unknown function (D...		Potri.010G230900 [exp]	1.41	0.9745
AT5G42765			unknown protein		Potri.014G196800 [exp]	4.00	0.9632
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.017G072800 [exp]	6.63	0.9498
AT1G32080		AtLrgB	membrane protein, putative (.1...		Potri.003G099600 [exp]	6.70	0.9623
AT1G64150			Uncharacterized protein family...		Potri.003G134300 [exp]	6.92	0.9635
AT2G03430			Ankyrin repeat family protein ...		Potri.010G185200 [exp]	9.38	0.9366
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.013G047000 [exp]	9.79	0.9619
AT1G20830		MCD1	multiple chloroplast division ...		Potri.002G006300 [exp]	9.79	0.9064
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Potri.010G005000 [exp]	10.58	0.9544

Compare expression of checked genes

Potri.010G158800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.