Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26460 767 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 75 / 1e-13 RPF2 rna processing factor 2 (.1) AT1G62930 74 / 2e-13 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 71 / 1e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 70 / 3e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 69 / 5e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 67 / 2e-11 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11710 67 / 2e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15630 64 / 2e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G25630 64 / 3e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046000 [exp] 74 / 2e-13 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 73 / 3e-13 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G144300 [exp] 69 / 7e-12 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 69 / 8e-12 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.016G025600 [exp] 66 / 5e-11 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G081700 [exp] 66 / 6e-11 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.010G249800 [exp] 65 / 1e-10 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.014G166001 [exp] 64 / 2e-10 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G070800 [exp] 64 / 2e-10 AT3G46610 780 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004649 [exp] 781 / 0 AT1G26460 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026663 [exp] 753 / 0 AT1G26460 719 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 74 / 2e-13 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 72 / 1e-12 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 72 / 1e-12 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026884 [exp] 69 / 9e-12 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10003424 [exp] 69 / 1e-11 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10042081 [exp] 67 / 4e-11 AT5G50280 648 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031792 [exp] 64 / 2e-10 AT1G79080 539 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009023 [exp] 64 / 2e-10 AT3G48810 543 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G159100.1 pacid=42799563 polypeptide=Potri.010G159100.1.p locus=Potri.010G159100 ID=Potri.010G159100.1.v4.1 annot-version=v4.1 ATGGCTTCCCAAATGGCAATTCTAACAAGAACAACAAAAACCCTAATGAAAGCCCTATACCCCCAAATCAAATCAATATCCTCCTTCGCTCACCCCTCGC AAGAAGCCCATCTCGCCACCGACCACCCTCCCTCCGATCACCCAAACCCCAACTCTAATTCAACTCCTTTCCCTCCAAATCCAGCTTCCGGAAGCCCACT CTACAATGACACAAACTGGCGAAACCCAATCCCAATCTACCAAAATCCTAACTCCCCTATGATCCCGCTCGGTCCCTTCCATAACCAAACCTCTAGAATC CAATCAATGCCTCCAAACATGGACTTGAATTCGCTATCAAATATGCTTGCTGATTGGACCACGTCACAGAGATGGGAAGATATCAAGGGGTATTTTGAGG CGTGGATTAAGTCACTAGATAGAAATGGGAAGCCTAATAAGCCTGATGTTAGCTTGTATAATCATTATTTAAGAGCTAATTTAATGATGAAAGCTAGTGC TGGTTATTTGCTTGATTTGGTTGCTCAAATGGAGGATTTTAATCTTTCGCCTAATACTGTTTCCTTCAATTTTGTTCTTAAAGCTATGTATGAAGGTCTT GAGACTGAGGCCGCTGAGAAGTTGCTTCAACGGATGGAGCATACGGGAAAAGAATCGCAGCCTGATGAGGAATCCTATGACCTGGTTGTTACCATGCTTC TCAATAAAGGCAACATTGATGCTTTTGATACTGCCTTGAAATATATAGATAAAATTCTAAAAGGTGATTACGTGTTATCGATGAAAGTATTTGATGCATG TGTTAGAAGCTGTTGTAACTTTGGCAGACTGGATGTGTTGCTATCGATTATTGAGAAGTGTAAGAAAATGGATCAGAACAAAGCTCTCTGTCCAAATTGG AACCTATGCAACCATATTGCTGAAATTGCATTAAAAGAGGATAACAGCAAGTTATTGTTTTGTGCCCTGGAGTTTATGGCTAGATGGATTGCTCGAGGAG AGAAGGCAAGGCCTATTGTTCTACTTTCAGTGGATGAAGGATTGATTGTGGCTGCGCTTGGAACTGCTGGCAGGACCTACAACTCCACTCTCCTGGATGC GTCATGGGCAATCCTTTGCCGCTCTTTACGTCAGAAGAAGGCTCCTAACCCGGAATCATATATTGGGAAGATATATGCCCATGCATCATTGGGCAGTCTG CAGAAGGCTTTTGCTACTTTGCGTGAATTGGAGTCTTGTTATGGGAGTTCTGATAAGGAAGCAGAAGAAGAATTGTTCTCACCATTCTCTTCTTTGAATC CACTAGTTCTGGCTTGCTCCAAGAAGGGTTTTGAGACTTTGGACTCGGTATATTTTCAGCTAGAGAATTTAAGTCGTGCAGAATCTCCATACAAGTCTGT GGCTGCTCTTAATTGTATAATTTTAGGTTGTGCAAATATATGGGATCTTGACCGCGCATACCAAACTTTTGAAGCGATTAGTTCTTCTTTCGGGCTGACC CCTAATATTCATTCATACAATGCTCTAATTTTTGCATTTGGAAGGCTCAAGAAGACATTTGAAGCTTCAAATGTGTTCGAGCACTTAGTGAGCTTGGGTG TTAAACCCAATGCTATGTCATATTCATTGCTTGTCGATGCTCATCTCATCAACCGAGATACAAAAGCTGCTGTGTTGGTGATTGAGAAGATGGATTCTGC TGGATTTGTCCCTTCCAAGGAAATACTAAAGAAGGTCAAAAGGCGCTGTATTCGAGAAATGGAATATGAGAGTGATGATCGAGTAGAATTCTGGGCTAGA AAGTTTGACTATCGATTGGGCTCTCAAAATCGTAGGGACTTGTTGTTTAATCTGGAGTACAGCACTGATTTTGCTTGA
AA sequence Show only first row Show all	>Potri.010G159100.1 pacid=42799563 polypeptide=Potri.010G159100.1.p locus=Potri.010G159100 ID=Potri.010G159100.1.v4.1 annot-version=v4.1 MASQMAILTRTTKTLMKALYPQIKSISSFAHPSQEAHLATDHPPSDHPNPNSNSTPFPPNPASGSPLYNDTNWRNPIPIYQNPNSPMIPLGPFHNQTSRI QSMPPNMDLNSLSNMLADWTTSQRWEDIKGYFEAWIKSLDRNGKPNKPDVSLYNHYLRANLMMKASAGYLLDLVAQMEDFNLSPNTVSFNFVLKAMYEGL ETEAAEKLLQRMEHTGKESQPDEESYDLVVTMLLNKGNIDAFDTALKYIDKILKGDYVLSMKVFDACVRSCCNFGRLDVLLSIIEKCKKMDQNKALCPNW NLCNHIAEIALKEDNSKLLFCALEFMARWIARGEKARPIVLLSVDEGLIVAALGTAGRTYNSTLLDASWAILCRSLRQKKAPNPESYIGKIYAHASLGSL QKAFATLRELESCYGSSDKEAEEELFSPFSSLNPLVLACSKKGFETLDSVYFQLENLSRAESPYKSVAALNCIILGCANIWDLDRAYQTFEAISSSFGLT PNIHSYNALIFAFGRLKKTFEASNVFEHLVSLGVKPNAMSYSLLVDAHLINRDTKAAVLVIEKMDSAGFVPSKEILKKVKRRCIREMEYESDDRVEFWAR KFDYRLGSQNRRDLLFNLEYSTDFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26460			Tetratricopeptide repeat (TPR)...		Potri.010G159100 [exp]	0	1
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G265300 [exp]	1.00	0.8301
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Potri.005G211600 [exp]	3.46	0.8194
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Potri.013G070001 [exp]	4.24	0.7622
AT3G23940			dehydratase family (.1.2)		Potri.003G176600 [exp]	4.58	0.7885
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	7.48	0.7879	Pt-PURE.2
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	8.06	0.7803	Pt-LON_ARA_ARA.2
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	8.48	0.7554
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Potri.002G054000 [exp]	9.89	0.6799	Pt-UVH6.1
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	12.00	0.7108
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.002G232600 [exp]	13.41	0.7368

Compare expression of checked genes

Potri.010G159100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.