Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03480 885 / 0 QUL2 QUASIMODO2 LIKE 2 (.1.2) AT1G13860 885 / 0 QUL1 QUASIMODO2 LIKE 1 (.1.2.3.4) AT1G78240 700 / 0 OSU1, TSD2, QUA2 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 333 / 3e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 333 / 3e-105 Putative methyltransferase family protein (.1) AT5G04060 327 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 327 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G14430 325 / 7e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G10200 321 / 7e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 318 / 4e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094800 [exp] 1138 / 0 AT2G03480 873 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.002G098000 [exp] 723 / 0 AT1G78240 1040 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G163900 [exp] 722 / 0 AT1G78240 1028 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 332 / 3e-105 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G036800 [exp] 328 / 3e-104 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 323 / 3e-102 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G342300 [exp] 320 / 3e-101 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G199300 [exp] 318 / 7e-100 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G043600 [exp] 315 / 2e-99 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037101 [exp] 988 / 0 AT1G13860 892 / 0.0 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10036883 [exp] 985 / 0 AT1G13860 887 / 0.0 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10036485 [exp] 674 / 0 AT1G78240 928 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010353 [exp] 613 / 0 AT1G78240 859 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10038973 [exp] 345 / 1e-110 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 335 / 3e-107 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 333 / 2e-105 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 331 / 2e-104 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 327 / 2e-103 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022291 [exp] 326 / 2e-103 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G159400.3 pacid=42798815 polypeptide=Potri.010G159400.3.p locus=Potri.010G159400 ID=Potri.010G159400.3.v4.1 annot-version=v4.1 ATGAGAAGCCCCTGGTTCAATAAACCATTTGCTATTCTTGGCCCCAGACCGCCAATTAGTTGTTTGCTGCTGTGCTTTGTTTGTGTGCTTGGACTAATCG CTATCTTGGGTTCTACTTCTTCGAGTGTGTTTGATTCTGTGACTCCCATTCCATTGCCTGATGTTTATTCCAGTTATAGAAGGTTAAAGGAACAAGCGGC GGTTGACTATTTGGAGCTTAGAACAATCTCACTAGGAGCTGGTCGGCAAACAGAGTTGGAACTCTGTGGCAGAGAAAAAGAAAATTACGTGCCTTGTTAC AATGTTTCAGCAAATTTGTTCGCTGGGTTTAAAGATGGGGAGGAGTTTGATCGGCATTGTGAAATTTCAAGACAAAGGGAACGGTGTTTGGTTCGTCCTC CAAAGGACTATAAGATCCCCTTAAGGTGGCCTGCTGGTAGGGATGCAATCTGGAGCGCAAATGTTAAGATAACCAAAGACCAGTTTCTTTCTTCCGGGAG CTTGACCAAAAGGTTGATGTTAGTGGAAGAGAATCAATTTGCCTTTCACTCTGAGGATGGGTTGGTCTTTGATGGTCTCAAAGACTATTCTCGCCAGGTT GCAGAGATGATAGGGTTAGGAAGTGATTCTGAATTCCTTCAAGCTGGTGTGCAAAGTGTGCTAGATATTGGTTGTGGATTTGGTATCTTTGGAGCTCATT TAGTATCATTGAAACTAATGCCTATTTGTATTGCGGCATATGAGGCAACTGGAAGCCAAGTTCAACTGGCCCTTGAAAGAGGTCTTCCAGCGATGATTGG CAATTTTATTTCACGACAACTTCCATATCCACCATTGTCATTTGACATGGTTCATTGTGCTCAATGTGGTATTGTTTGGGATGAAAAAGATGGCATGCTC CTTATTGAAGTGGATCGAGTTCTTAAGCCTGGAGGTTACTTTGTTTTAACTTCACCAGCAAGCAATCCACATGGAAGTTCATCGAATACAAAGAAGAGAA GCACTCTGACACCAACAGAAGAATTTAGTGAAAATATCTGTTGGAATCTTATAGCTCAGCAGGATGAGACTTTCATCTGGCAGAAAACTGTGGATGTTCA TTGCTATAAATCTCGCAAGCATGGTGCTCTACCACTTTGCAATGATGTTCACAATACTCCATATTATCAACCCCTCATGTCATGTATAAGCGGGACCACC AGCAATCGCTGGATTCCCATCCAGAACAGGTCCTCTGGTCCCCATTTGAGCTCAGCAGAGCTTGTAGGTCATGGAGTTCAGCCAGAAGATTTCTTTGAAG ACTCTCAGGTTTGGAGATCAGCTCTCAGAAACTACTGGTCCCTGCTTTCACCTATAATTTTCTCCGACCATCCTAAGAGGCCAGGTGATGAAGATCCAAC ACCTCCATATAACATGGTACGCAATGTTATGGACATGAATGCACAATACGGAGGTTTAAATGCTGCAATGCTGGAGGAAAAGAAATTAGTTTGGGTGATG AATGTTGTGCCTGTCAGGGCTCCTAATACACTTCCTCTCATACTTGATCGTGGTTTTGCTGGTGTCATGCATGACTGGTGTGAGCCATTCCCCACTTACC CCCGAACATATGACATGCTTCATGCTAATGGGCTCCTCTCACATCTCAGTTCAGAGAGATGCGCCATGATGGATTTATTTTTAGAGATGGATCGAATTCT ACGCCCTGAGGGATGGGTTATATTTTCTGATAAATTGGGAGCTATTGAGATGGCACGAGCACTTGCTATGCAGATACATTGGGAAGCAAGGGTGATTGAC CTAGATAATGGCAGTGACCAGCGGCTACTTGTTTGCCAAAAACCATTTATGAAAAAATGA
AA sequence Show only first row Show all	>Potri.010G159400.3 pacid=42798815 polypeptide=Potri.010G159400.3.p locus=Potri.010G159400 ID=Potri.010G159400.3.v4.1 annot-version=v4.1 MRSPWFNKPFAILGPRPPISCLLLCFVCVLGLIAILGSTSSSVFDSVTPIPLPDVYSSYRRLKEQAAVDYLELRTISLGAGRQTELELCGREKENYVPCY NVSANLFAGFKDGEEFDRHCEISRQRERCLVRPPKDYKIPLRWPAGRDAIWSANVKITKDQFLSSGSLTKRLMLVEENQFAFHSEDGLVFDGLKDYSRQV AEMIGLGSDSEFLQAGVQSVLDIGCGFGIFGAHLVSLKLMPICIAAYEATGSQVQLALERGLPAMIGNFISRQLPYPPLSFDMVHCAQCGIVWDEKDGML LIEVDRVLKPGGYFVLTSPASNPHGSSSNTKKRSTLTPTEEFSENICWNLIAQQDETFIWQKTVDVHCYKSRKHGALPLCNDVHNTPYYQPLMSCISGTT SNRWIPIQNRSSGPHLSSAELVGHGVQPEDFFEDSQVWRSALRNYWSLLSPIIFSDHPKRPGDEDPTPPYNMVRNVMDMNAQYGGLNAAMLEEKKLVWVM NVVPVRAPNTLPLILDRGFAGVMHDWCEPFPTYPRTYDMLHANGLLSHLSSERCAMMDLFLEMDRILRPEGWVIFSDKLGAIEMARALAMQIHWEARVID LDNGSDQRLLVCQKPFMKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	0	1
AT4G24840			unknown protein		Potri.015G094000 [exp]	1.41	0.9593
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	2.44	0.9552
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	2.82	0.9503
AT4G02030			Vps51/Vps67 family (components...		Potri.002G196300 [exp]	3.16	0.9443
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	3.60	0.9439
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.003G015300 [exp]	4.00	0.9536
AT4G32120			Galactosyltransferase family p...		Potri.018G024500 [exp]	4.58	0.9330
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.002G028600 [exp]	4.58	0.9505
AT5G11710			ENTH/VHS family protein (.1)		Potri.006G234100 [exp]	4.89	0.9556
AT5G51540			Zincin-like metalloproteases f...		Potri.015G129300 [exp]	5.74	0.9442

Compare expression of checked genes

Potri.010G159400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.