Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15490 853 / 0 UGD3 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) AT3G29360 852 / 0 UGD2 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) AT5G39320 845 / 0 UDP-glucose 6-dehydrogenase family protein (.1) AT1G26570 843 / 0 UGD1, ATUGD1 UDP-glucose dehydrogenase 1 (.1) AT3G01010 240 / 7e-78 UDP-glucose/GDP-mannose dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094300 [exp] 941 / 0 AT3G29360 858 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Potri.004G118600 [exp] 875 / 0 AT5G15490 879 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Potri.017G092000 [exp] 870 / 0 AT3G29360 898 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026656 [exp] 865 / 0 AT1G26570 868 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10004656 [exp] 860 / 0 AT1G26570 864 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10026657 [exp] 852 / 0 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10034703 [exp] 849 / 0 AT5G15490 882 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10037096 [exp] 845 / 0 AT1G26570 815 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10021626 [exp] 843 / 0 AT5G15490 875 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10036887 [exp] 451 / 3e-159 AT3G29360 444 / 5e-157 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Lus10036886 [exp] 325 / 6e-110 AT5G15490 327 / 3e-111 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10021639 [exp] 132 / 2e-37 AT1G26570 145 / 6e-43 UDP-glucose dehydrogenase 1 (.1) Lus10004657 [exp] 117 / 1e-31 AT5G15490 133 / 4e-38 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF00984 [poplar] [flax] UDPG_MGDP_dh UDP-glucose/GDP-mannose dehydrogenase family, central domain CL0039 [poplar] [flax] HUP PF03720 [poplar] [flax] UDPG_MGDP_dh_C UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CL0063 [poplar] [flax] NADP_Rossmann PF03721 [poplar] [flax] UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G159800.2 pacid=42799077 polypeptide=Potri.010G159800.2.p locus=Potri.010G159800 ID=Potri.010G159800.2.v4.1 annot-version=v4.1 ATGGTGAAGATCTGTTGCATTGGAGCTGGCTACGTCGGTGGGCCTACCATGGCTGTGATTGCACTGAAGTGCCCAAAAATTGAAGTGGTAGTTGTTGATA TTTTTGAGCCTCGAATCATTGCCTGGAATAGTGACCAACTCCCCATTTATGAGCCAGGCCTCGATGATGTGGTAAAACAGTGCAGGGGAAAGAACCTCTT CTTTAGCAAAGATGTGGAAAAGCATGTGGCAGAGGCTGATATAGTCTTTGTATCTGTGAATACACCAACCAAAACTCAGGGACTTGGAGCTGGCAAAGCA GCTGATCTAACTTATTGGGAGAGTGCTGCTCGTATGATTGCAGATGTTTCAAAATCTGACAAAATTGTTGTTGAGAAATCAACAGTTCCAGTGAAAACGG CAGAAGCAATTGAAAAGATTTTGACCCACAACAGCAAAGGCATCAACTTTCAGATTCTCTCCAACCCAGAATTTCTTGCCGAGGGAACTGCAATCCAGGA CCTTTTCAAACCAGACCGAGTCCTTATTGGTGGCAGGGAGACCCCAGAAGGGCAAAAGGCAATTCAAGCATTGAAAGATGTTTATGCCCATTGGGTTCCT GCGGAACGGATCATATGCACCAATCTCTGGTCTGCTGAACTGTCGAAACTTGCTGCAAATGCCTTTTTGGCACAAAGGATCTCTTCTGTTAATGCCATGT CGGCACTATGTGAAGCCACTGGAGCAGATGTCTCCCAAGTGTCACATGCTATTGGCAAGGACACAAGGATTGGGCCTAAGTTCTTGAATGCAAGTGTGGG TTTTGGTGGATCATGTTTCCAGAAGGATATCTTGAACTTGGTCTATATTTGCGAGTGCAATGGCCTCACCGAGGTTGCAAACTACTGGAAACAGGTCGTT CGGGTGAATGAGTACCAAAAGACCCGTTTTGTGAACAGGGTGGTTTCCTCCATGTTTAACACTGTCTCAGGTAAGAAGATTGCAATTTTAGGATTTGCTT TCAAGAAAGACACGGGTGATACAAGGGAGACCCCGGCCATAGGTGTTTGCCAGGGCTTGTTGGGTGACAAGGCTATTTTGAGCATATATGACCCTCAGGT TCCACAGGAACAGATTCAAAGGGATCTCTCAATGCACAAATCTGAATTGGACAAGCCCCCTCATCTTCGGCCAGTGAGCCCCGTAGCTATAGAGCAAGTT ACTTGCGTGCGGGATGCTTATGAGGCGACAAAGGGTGCTCACGGGATCTGCGTTCTAACTGAGTGGGATGAGTTCAAAACTCTTGATTACCAGAAGATCT ATAACGACATGCAGAAGCCTGCTTTTGTTTTTGATGGACGGAATGTAATGGATGTTGATAAGCTGAGGCAAATTGGGTTTATTGTTTACTCCATTGGCAA GCCATTGGATGCCTGGCTGAAGGACATGCCTGCTGTGGCATAA
AA sequence Show only first row Show all	>Potri.010G159800.2 pacid=42799077 polypeptide=Potri.010G159800.2.p locus=Potri.010G159800 ID=Potri.010G159800.2.v4.1 annot-version=v4.1 MVKICCIGAGYVGGPTMAVIALKCPKIEVVVVDIFEPRIIAWNSDQLPIYEPGLDDVVKQCRGKNLFFSKDVEKHVAEADIVFVSVNTPTKTQGLGAGKA ADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFKPDRVLIGGRETPEGQKAIQALKDVYAHWVP AERIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVV RVNEYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIGVCQGLLGDKAILSIYDPQVPQEQIQRDLSMHKSELDKPPHLRPVSPVAIEQV TCVRDAYEATKGAHGICVLTEWDEFKTLDYQKIYNDMQKPAFVFDGRNVMDVDKLRQIGFIVYSIGKPLDAWLKDMPAVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Potri.010G159800 [exp]	0	1
AT2G01210			Leucine-rich repeat protein ki...		Potri.017G119000 [exp]	14.49	0.7280
AT1G79330		ATMC5, AMC6, AT...	metacaspase 2b, metacaspase 5 ...		Potri.008G081100 [exp]	24.18	0.7447
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Potri.018G024800 [exp]	64.40	0.7321
AT5G48460			Actin binding Calponin homolog...		Potri.002G251600 [exp]	88.98	0.7155
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Potri.001G158900 [exp]	92.81	0.7066	Pt-RAN1.4
AT1G77420			alpha/beta-Hydrolases superfam...		Potri.010G124000 [exp]	97.34	0.6685
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Potri.008G009500 [exp]	121.02	0.6901
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.017G144541 [exp]	129.61	0.6995
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.011G156100 [exp]	143.47	0.6983	MUR4.2
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Potri.017G070200 [exp]	182.68	0.6742	Pt-ACG12.2

Compare expression of checked genes

Potri.010G159800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.