Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HIUHASE.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26560 795 / 0 BGLU40 beta glucosidase 40 (.1) AT5G54570 606 / 0 BGLU41 beta glucosidase 41 (.1) AT3G18080 529 / 0 BGLU44 B-S glucosidase 44 (.1) AT3G18070 508 / 2e-177 BGLU43 beta glucosidase 43 (.1.2) AT5G24550 489 / 2e-169 BGLU32 beta glucosidase 32 (.1) AT5G44640 485 / 3e-168 BGLU13 beta glucosidase 13 (.1) AT2G44450 476 / 8e-165 BGLU15 beta glucosidase 15 (.1) AT2G44480 473 / 2e-163 BGLU17 beta glucosidase 17 (.1.2) AT5G42260 472 / 3e-163 BGLU12 beta glucosidase 12 (.1) AT3G60140 474 / 4e-163 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094200 [exp] 960 / 0 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.001G409900 [exp] 607 / 0 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.012G049300 [exp] 514 / 2e-179 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.015G041300 [exp] 508 / 2e-177 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.T085301 [exp] 508 / 2e-177 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 508 / 3e-177 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 503 / 2e-175 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.002G219600 [exp] 489 / 1e-169 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.005G059500 [exp] 489 / 2e-169 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037098 [exp] 768 / 0 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 761 / 0 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 757 / 0 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10026657 [exp] 651 / 0 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10009218 [exp] 613 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037988 [exp] 595 / 0 AT5G54570 741 / 0.0 beta glucosidase 41 (.1) Lus10037987 [exp] 538 / 0 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10031235 [exp] 527 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 522 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 520 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.010G159900.1 pacid=42797395 polypeptide=Potri.010G159900.1.p locus=Potri.010G159900 ID=Potri.010G159900.1.v4.1 annot-version=v4.1 ATGCTACCGAGAGGAGTCCGCATTGCCTTTCTCATAGTAGTGCTAGTAGCTTTTGAGATTCAGACATCCCTGTCACAGATTAATAGGGCGAGTTTTCCAA AGGGTTTTGTCTTTGGGACAGCCTCTTCTGCTTTCCAGTATGAAGGAGCAGTGAAAGCGGATGGAAGGGGACCAAGTGTTTGGGACGCATTTTCACATAC TTTTGGCAAGATAATTGATTTCAGCAATGCTGATGTGGCCGTGGATCAATATCACCTTTTTGATGAAGACATAAAACTTATGAAGGATATGGGAATGGAC GCCTACAGATTTTCAATTTCTTGGTCTCGAATATATCCTAATGGAACAGATAAAATCAATCAGGCAGGAGTTGATCATTACAACAAATTCATCAACGCTT TACTTGCTCAAGGAATTGAGCCTTATGTGACCCTATACCATTGGGACCTTCCTCAAGCCTTGCATGACAAATATAATGGATGGCTCAGCCCCCAGATCAT AAAGGACTTTGCAACATTCGCAGAGACATGCTTTGAGATTTATGGTAACAGGGTAAAGCATTGGATCACATTCAATGAGCCTCATACAGTTGCTATTCAG GGTTATGATGTAGGTCTCCAGGCACCAGGAAGATGCTCTATCTTTCTCCACCTCTTCTGCCGGGCTGGAAATTCAGCGACTGAGCCCTACATTGTCGCCC ACAACATCCTTCTTTCTCATGGGACTGTGGCAGATATTTACAGGAAAAAGTACAAGGCAAAACAACGAGGATCCCTGGGCATATCACTTGATGTAATATG GTTTGAACCAGCAACAAACACCACAAATGACATTGAAGCAGCCCAAAGAGCCCAGGATTTTCAGCTTGGCTGGTTTATCGAACCTTTGATCTTAGGCAAC TATCCGATCACAATGAGAAACAGAGTAGGGGATAGACTGCCAAATTTTACTGAAAATGACGTCGCTCTTGTTAAAGGGTCTTTTGATTTTGTTGGCATCA ATCACTACACAACATTTTATGCACGAAGCAATGACTCTCTGTTTGGGGATCTAATTGGCAAAGTCCTTAATGACTCTCTCGCAGACTCTGGTGCCATAAC CCTCCCATTTGGTGAACATTTGAAGCCCATTGGAGACCGGGCAAGTTCTATATGGTTGTACATAGTACCTCGAGGGATGAGAAGCTTAATGAATTACATC AGGCAAAAGTACGGAAACCCTCCCGTCATTATAACTGAAAATGGGATGGATGATCCAAATCACGCCTGGACCCCCATTAAAGATGCTCTAAAGGATGAGA AAAGGATCAAATACCACAAGGACTATCTGGCAAGCCTGCTAGCTTCTATCAAAGAAGATGGTTGCAATGTGAAAGGGTATTTTGTATGGTCCCTTTTGGA TAATTGGGAGTGGGCAGCTGGTTACACTTCAAGGTTTGGTCTCTACTTTGTGGATTACAAGGACAAGCTCAAGCGATACCCCAAGGACTCTGTTCAATGG TTCAAAAAGTTCTTGACTTCTACTTAG
AA sequence Show only first row Show all	>Potri.010G159900.1 pacid=42797395 polypeptide=Potri.010G159900.1.p locus=Potri.010G159900 ID=Potri.010G159900.1.v4.1 annot-version=v4.1 MLPRGVRIAFLIVVLVAFEIQTSLSQINRASFPKGFVFGTASSAFQYEGAVKADGRGPSVWDAFSHTFGKIIDFSNADVAVDQYHLFDEDIKLMKDMGMD AYRFSISWSRIYPNGTDKINQAGVDHYNKFINALLAQGIEPYVTLYHWDLPQALHDKYNGWLSPQIIKDFATFAETCFEIYGNRVKHWITFNEPHTVAIQ GYDVGLQAPGRCSIFLHLFCRAGNSATEPYIVAHNILLSHGTVADIYRKKYKAKQRGSLGISLDVIWFEPATNTTNDIEAAQRAQDFQLGWFIEPLILGN YPITMRNRVGDRLPNFTENDVALVKGSFDFVGINHYTTFYARSNDSLFGDLIGKVLNDSLADSGAITLPFGEHLKPIGDRASSIWLYIVPRGMRSLMNYI RQKYGNPPVIITENGMDDPNHAWTPIKDALKDEKRIKYHKDYLASLLASIKEDGCNVKGYFVWSLLDNWEWAAGYTSRFGLYFVDYKDKLKRYPKDSVQW FKKFLTST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.010G159900 [exp]	0	1	HIUHASE.2
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.002G128000 [exp]	2.44	0.9656
					Potri.002G021200 [exp]	2.64	0.9691
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.016G118500 [exp]	5.29	0.9621
AT1G68630			PLAC8 family protein (.1)		Potri.010G127800 [exp]	5.65	0.9508
					Potri.017G046800 [exp]	5.74	0.9631
AT3G09220		LAC7	laccase 7 (.1)		Potri.006G094100 [exp]	6.48	0.9588	LAC110a
AT1G73165		CLE1	CLAVATA3/ESR-RELATED 1 (.1)		Potri.011G096800 [exp]	7.14	0.9508
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.016G101400 [exp]	7.93	0.9587	RBE.1
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Potri.010G201200 [exp]	9.21	0.9593
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018901 [exp]	10.58	0.9514

Compare expression of checked genes

Potri.010G159900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.