Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69310 208 / 4e-66 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT2G47260 144 / 7e-41 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT4G18170 144 / 8e-41 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT1G29860 137 / 1e-38 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G46350 135 / 2e-37 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT5G49520 136 / 3e-37 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT4G39410 129 / 2e-35 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G44745 120 / 5e-33 WRKY WRKY12 WRKY family transcription factor (.1) AT3G62340 118 / 2e-31 WRKY ATWRKY68, WRKY68 WRKY family transcription factor (.1) AT2G46130 108 / 8e-30 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094000 [exp] 435 / 2e-155 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.008G103300 [exp] 157 / 3e-45 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.010G147700 [exp] 154 / 3e-44 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.014G118200 [exp] 151 / 1e-43 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.002G193000 [exp] 150 / 2e-43 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.011G079300 [exp] 146 / 7e-42 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1) Potri.001G352400 [exp] 144 / 6e-41 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.005G203200 [exp] 144 / 9e-41 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.002G059100 [exp] 143 / 2e-40 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036891 [exp] 198 / 3e-61 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10037094 [exp] 197 / 5e-61 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10037785 [exp] 149 / 2e-42 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10017067 [exp] 148 / 4e-42 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004612 [exp] 143 / 1e-40 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10004537 [exp] 140 / 1e-39 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10012547 [exp] 114 / 2e-31 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10007906 [exp] 115 / 6e-31 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10036401 [exp] 115 / 8e-31 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10020832 [exp] 116 / 1e-30 AT4G39410 169 / 3e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G160100.5 pacid=42798435 polypeptide=Potri.010G160100.5.p locus=Potri.010G160100 ID=Potri.010G160100.5.v4.1 annot-version=v4.1 ATGGACGATCGAGATAATCTTGATCCAGGGACCGAGTTCACCAGCGAGTCAAGCTGGACACTCGGTCATGACTCAGATAGTGTCAATTATTTCTTCTCCA ACGATCGAGAGAACTCCATACTCAGCGAATTCGGATGGAATCTTCAATCGGACGAACCATCCCGGATTAAGGACCTCGATCGGATAGAAGCAGAAGAGAG GTCCGATTCGGCAGGAAACCTAGAGATTCAGCGATCATCAGCAGCTGGTCCGGCAAGGTCTAGTGGTAGAGGCAGTCGTGACGTTTCGACTACGAACTAT CCATCAGTATCATCGAGCTCCAGCGAGGATCCACCCGAGAAGTCTACGGACTCCGGCGGGAAACCGCCTGAGATACCGAGTACGGTTAAAAAGAAGGGTC AGAAAAGGATCCGGCAGCCACGTTTTGCATTTATGACCAAAAGCGAAGTTGATCATCTTGAAGATGGATACAGATGGCGGAAATATGGACAGAAGGCAGT TAAAAATAGTCCATTTCCTAGGAGCTACTATCGCTGCACAAATAGCAAATGCACTGTGAAGAAAAGGGTTGAACGGTCGTCTGAAGATCCCACCATTGTG ATTACCACATATGAAGGCCAGCACTGTCACCATACTGTTGGTTTTCCTCGAGGAGGAATCATTTGTCATCAAGCTACATTTTCTAGTCACATGACTCCTC CAATGTCGCAATTTATTTACCCTGGAATGCAATTACCCCGAGAAAATCCTCCGAGTACTGTGGTGCAGTCACGGCCATTACCGGTTGAAGCAAGAGAATG CAGTACAGTGTCGTCAACACCAACTCCCCAACTTGCAACAGATGGACTGCTTGGGGACATTGTGCCTCCTGGAATGCGATGA
AA sequence Show only first row Show all	>Potri.010G160100.5 pacid=42798435 polypeptide=Potri.010G160100.5.p locus=Potri.010G160100 ID=Potri.010G160100.5.v4.1 annot-version=v4.1 MDDRDNLDPGTEFTSESSWTLGHDSDSVNYFFSNDRENSILSEFGWNLQSDEPSRIKDLDRIEAEERSDSAGNLEIQRSSAAGPARSSGRGSRDVSTTNY PSVSSSSSEDPPEKSTDSGGKPPEIPSTVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIV ITTYEGQHCHHTVGFPRGGIICHQATFSSHMTPPMSQFIYPGMQLPRENPPSTVVQSRPLPVEARECSTVSSTPTPQLATDGLLGDIVPPGMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.010G160100 [exp]	0	1
					Potri.012G012300 [exp]	4.58	0.8932
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099100 [exp]	6.63	0.9286
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067400 [exp]	10.95	0.9203
					Potri.011G080900 [exp]	20.63	0.9205
AT5G06490			RING/U-box superfamily protein...		Potri.008G019000 [exp]	25.82	0.8926
AT5G37360			unknown protein		Potri.019G023700 [exp]	27.11	0.8958
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Potri.019G034100 [exp]	28.77	0.9147
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Potri.008G029300 [exp]	29.47	0.9030
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Potri.008G066500 [exp]	32.09	0.9116
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.004G002600 [exp]	33.10	0.9095

Compare expression of checked genes

Potri.010G160100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.