Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29320 1397 / 0 PHS1 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) AT3G46970 581 / 0 ATPHS2, PHS2 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048600 [exp] 766 / 0 AT3G46970 842 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.004G123600 [exp] 743 / 0 AT3G29320 727 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.009G041800 [exp] 587 / 0 AT3G46970 1445 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.008G093901 [exp] 149 / 5e-42 AT3G29320 131 / 8e-37 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037093 [exp] 1463 / 0 AT3G29320 1378 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10042688 [exp] 1364 / 0 AT3G29320 1422 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10036892 [exp] 1206 / 0 AT3G29320 1108 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10029643 [exp] 826 / 0 AT3G29320 863 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10001200 [exp] 564 / 0 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10029644 [exp] 526 / 0 AT3G29320 538 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10007546 [exp] 52 / 1e-06 ND 63 / 1e-10
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00343 [poplar] [flax] Phosphorylase Carbohydrate phosphorylase
Representative CDS sequence Show only first row Show all	>Potri.010G160200.9 pacid=42797013 polypeptide=Potri.010G160200.9.p locus=Potri.010G160200 ID=Potri.010G160200.9.v4.1 annot-version=v4.1 ATGGCTACTTTACCATTCTCTGCAGCTCAATCGAGTTCAGTTTCGGGCTTCAACTACAGAGCCAGTCATTCCAATCTTTTCTTTGTTAGAACCCCACGAT TTTTCAATCGTTTAAAAAGAAGAAACTTGTCCGTCAAGAACATTACTAGTGACCAAAGGCAAGAATTGAAAGATCCCTCAGTCAATGGAGAAGCTTCTTT AGAGACCCTCGAACCTGATTCTGCATCTATTGCAGCCAGTATTCAATACCATGCAGAATTCACACCATTATTCTCTCCAGAACATTTTGATCTTCCCAAG GCGTTTGTGGCAACTGCAGAAAGCGTTCGCGATTCGCTAATTATAAATTGGAATGCCACATATAAGTACTACGAGAAGATGAATGTAAAGCAGGCTTATT ACCTGTCTATGGAGTATCTACAGGGCAGAGCATTGCTAAATGCCATCGGGAACTTGGAGCTTTCAGGAGCTTACGCTGATGCTTTGAGAAAGTTGGGCCA CGAGTTAGAGGATGTAGCTGGACAGGAACCAGATGCTGCACTGGGGAACGGGGGCTTAGGGCGGCTTGCTTCCTGCTTTCTGGATTCGTTAGCAACACTG AATTATCCTGCTTGGGGGTATGGACTCAGGTACAAATATGGCTTGTTCAAACAGCTCATCACAAAAGATGGGCAGGAGGAAGTTGCAGAAAATTGGCTTG AGATGGGCAATCCATGGGAAATTGTAAGAAATGATGTCTCCTATTCTGTTAAATTCTATGGAGAAGTTATTTCCAAGCCTGATGGAAGTAAAGAATGGAT TGGAGGAGAAAACATCACAGCTGTTGCGTATGATGTCCCAATTCCTGGATATAAAACTAAAACCACAATAAACCTTAGATTGTGGTCCACTAAAGTTGCA CCGAATGAATTTGATTTACGTGCTTATAATGCTGGAGATCATGCCAAGGCGTGTGCAGCTCTAAAGAATGCCGAAAAGATTTGCTACATATTATACCCCG GAGATGAATCAACTGAGGGCAAGATTCTACGGTTGAAGCAACAATATACACTATGCTCTGCATCTCTCCAAGATATCATTGCTCACTTTGAAAGGAGATC AGGGAAGCCTGTAAATTGGGAAAATTTTCCAGATAAGGTTGCAGTGCAAATGAATGACACTCATCCAACACTTTGCATTCCGGAGCTGATAAGAATTTTG ATAGATTTGAAGGGTTTGAGCTGGAAGGAATCATGGTATATTACTCAGAGAACTGTTGCATACACAAATCACACAGTTTTGCCTGAGGCTCTGGAGAAAT GGAGCTTAGACCTTTTGCAGAAACTTCTGCCACGACATGTTGAGATCATTAGGATGATTGATGAAGAGCTGATTCATACCATAATTGCGGAGTATGGCAC AGGGGATCTCGACTTGTTGCAGCATAAGCTAAAGCAAATGAGAATTCTTGATAATATTGAGTTGCCTGACTCAGTTCTAGAACTGTTAGTTAAACAAGAA GAAAGTTCTTCTGTTGACTCCATTAAGGAAGTTAAAGTCTCAGATGCAGAAACTGAATCTACTGATGAAGAACAGTCTGAAGAACAGGACACTGATGCGA AAGATGTGGTGACATTTGATCCAGATCCAAATCTGCCAAAGATGGTCCGCATGGCTAATCTATGTGTTGTCGGTGGGTATGCTGTAAATGGAGTTGCTGA GATTCACAGTGAAATAGTAAAAAATGAAGTATTTAATGAGTTCTATAAGTTGTGGCCTGAGAAATTTCAGAATAAAACAAATGGGGTGACACCAAGAAGA TGGATTCGTTTTTGCAATCCAGATCTCAGTAAAATCATAACCAAGTGGACTGGAACAGATGATTGGGTCTTAAACACTGAGAAACTGTCGACACTTGCAG AGTTTTCTGATAATGAGGACCTCCAATCTGAGTGGAGGGAAGCCAAAAAAAGAAACAAGATCAAGGTTGCCGACTTCCTTAAAGAAAAGACTGGATATAT TGTCAATCCTGACGCAATGTTTGATGTACAGGTAAAGCGCATCCACGAATACAAGCGGCAGTTACTGAATATAATGGGAATTGTGTATCGCTATAAGAAA ATGAAAGAAATGAGTCCTGAGGAAAGAAAGGCGAGGTATGTTCCTAGGGTATGTATATTTGGAGGCAAAGCATTTGCTACATATGTCCAAGCCAAGAGGA TTGTGAAATTTATCACAGATGTGGGAACTACTGTTAATCATGATGCAGACATAGGCGACCTTTTGAAGGTTGTCTTTGTACCTGATTACAATGTCAGTGT GGCAGAGGTACTGATTCCAGGAAGCGAGCTTTCGCAGCACATCAGCACGGCTGGAATGGAGGCCAGTGGAACCAGCAATATGAAGTTTGCAATGAATGGC TGCATCCTTATTGGCACCTTAGATGGAGCTAATGTTGAAATAAGGCAAGAGGTTGGCGAAGATAATTTTTTCCTCTTTGGTGCAGAGGCACACGAAATTG CAGGCCTAAGAAAGGAAAGGGCTGAGGGAAAATTTATCCCTGATCCGAGGTTCGAAGAAGTAAAGGCGTTTGTCAGAAATGGTGTTTTTGGCCATTACAA CTATGAAGAACTCATGGGATCCTTGGAAGGAAATGAAGGTTATGGCCGAGCTGATTATTTCCTTGTTGGCAAGGATTTCCCTAGTTATGTGGAGTGCCAG GAGAAGGTTGACGAGGCATATAAAGATCAGAAAAGATGGACAAAAATGTCGATTTTGAATACGGCTGGCTCATACAAGTTCAGCAGTGACAGAACGATTC ACGAATATGCAAGAGACATATGGAGGATCCAACCTGTTCTATTGCCTTGA
AA sequence Show only first row Show all	>Potri.010G160200.9 pacid=42797013 polypeptide=Potri.010G160200.9.p locus=Potri.010G160200 ID=Potri.010G160200.9.v4.1 annot-version=v4.1 MATLPFSAAQSSSVSGFNYRASHSNLFFVRTPRFFNRLKRRNLSVKNITSDQRQELKDPSVNGEASLETLEPDSASIAASIQYHAEFTPLFSPEHFDLPK AFVATAESVRDSLIINWNATYKYYEKMNVKQAYYLSMEYLQGRALLNAIGNLELSGAYADALRKLGHELEDVAGQEPDAALGNGGLGRLASCFLDSLATL NYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEMGNPWEIVRNDVSYSVKFYGEVISKPDGSKEWIGGENITAVAYDVPIPGYKTKTTINLRLWSTKVA PNEFDLRAYNAGDHAKACAALKNAEKICYILYPGDESTEGKILRLKQQYTLCSASLQDIIAHFERRSGKPVNWENFPDKVAVQMNDTHPTLCIPELIRIL IDLKGLSWKESWYITQRTVAYTNHTVLPEALEKWSLDLLQKLLPRHVEIIRMIDEELIHTIIAEYGTGDLDLLQHKLKQMRILDNIELPDSVLELLVKQE ESSSVDSIKEVKVSDAETESTDEEQSEEQDTDAKDVVTFDPDPNLPKMVRMANLCVVGGYAVNGVAEIHSEIVKNEVFNEFYKLWPEKFQNKTNGVTPRR WIRFCNPDLSKIITKWTGTDDWVLNTEKLSTLAEFSDNEDLQSEWREAKKRNKIKVADFLKEKTGYIVNPDAMFDVQVKRIHEYKRQLLNIMGIVYRYKK MKEMSPEERKARYVPRVCIFGGKAFATYVQAKRIVKFITDVGTTVNHDADIGDLLKVVFVPDYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFAMNG CILIGTLDGANVEIRQEVGEDNFFLFGAEAHEIAGLRKERAEGKFIPDPRFEEVKAFVRNGVFGHYNYEELMGSLEGNEGYGRADYFLVGKDFPSYVECQ EKVDEAYKDQKRWTKMSILNTAGSYKFSSDRTIHEYARDIWRIQPVLLP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.010G160200 [exp]	0	1
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.013G103600 [exp]	1.00	0.9570
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.017G028800 [exp]	1.41	0.9493	NS1.2
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Potri.010G185800 [exp]	3.46	0.9439
AT2G24280			alpha/beta-Hydrolases superfam...		Potri.006G207900 [exp]	8.94	0.9115
AT3G16000		MFP1	MAR binding filament-like prot...		Potri.001G179600 [exp]	9.53	0.9183
AT4G33760			tRNA synthetase class II (D, K...		Potri.001G289001 [exp]	9.74	0.9099
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	10.19	0.9369
AT5G38510			Rhomboid-related intramembrane...		Potri.017G112900 [exp]	10.24	0.9258
AT1G53250			unknown protein		Potri.011G112300 [exp]	11.40	0.9028
AT5G13770			Pentatricopeptide repeat (PPR-...		Potri.010G098700 [exp]	13.19	0.9199

Compare expression of checked genes

Potri.010G160200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.