Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13890 266 / 1e-89 ATSNAP30, SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) AT5G61210 246 / 6e-81 SNP33, ATSNAP33B, SNAP33 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) AT5G07880 163 / 3e-49 ATSNAP29, SNAP29 ARABIDOPSIS THALIANA SYNAPTOSOMAL-ASSOCIATED PROTEIN SNAP25-LIKE 29, synaptosomal-associated protein SNAP25-like 29 (.1) AT3G61450 42 / 0.0003 ATSYP73, SYP73 syntaxin of plants 73 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093800 [exp] 375 / 3e-132 AT1G13890 337 / 4e-117 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Potri.015G049000 [exp] 257 / 3e-85 AT5G61210 403 / 3e-142 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.012G066700 [exp] 218 / 4e-70 AT5G61210 360 / 3e-125 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.006G129500 [exp] 44 / 6e-05 AT3G09740 377 / 3e-133 syntaxin of plants 71 (.1) Potri.014G087400 [exp] 43 / 0.0001 AT3G09740 352 / 2e-123 syntaxin of plants 71 (.1) Potri.016G088200 [exp] 42 / 0.0003 AT3G09740 384 / 3e-136 syntaxin of plants 71 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004660 [exp] 244 / 2e-80 AT1G13890 349 / 4e-122 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10037092 [exp] 243 / 6e-80 AT1G13890 327 / 1e-113 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10036893 [exp] 242 / 1e-79 AT1G13890 335 / 2e-116 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10015738 [exp] 238 / 1e-77 AT5G61210 381 / 1e-133 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10003466 [exp] 236 / 8e-77 AT5G61210 379 / 1e-132 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10034705 [exp] 228 / 8e-74 AT5G61210 350 / 1e-121 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10026653 [exp] 184 / 4e-58 AT1G13890 220 / 1e-72 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G160350.1 pacid=42799794 polypeptide=Potri.010G160350.1.p locus=Potri.010G160350 ID=Potri.010G160350.1.v4.1 annot-version=v4.1 ATGTTTGGATTTGGGAAATCACCTGCGAATAATAAAGCTACCAAGCAAAGTTCAGTGAACCCTCCAGCCTCTTCTACCTCTAACCCTTTTGATTCAGATG ATGAATCCAATGCCAAGCAAACACTTCATCTCGGAAAACGAGCTTCTTCCGAGTCCATGCTTAATGTTCTCGATAATGCTTTCGATGATAAAGACAGATA CAAGAATGATTTCCGTGACTCGGGAGGGCTAGAAAACCAAAGCGTTCAAGAACTGGAGAAATACGCTGCCTACAAGGCTGAGGAGACAACAAACAGTGTT AATAACTGCCTCAGGATTGCTGAGGACATCAAACAAGATGCTACAAGGACTCTAGATAGCTTAGTATTAAAATTCTATAAGGATAATGTCATTTTATTTC AACTGTCTGCCTGGCAAGAGAACCCTCAACAGGGAAAAAAAAATGGAGAGAAGCTCTTAAACAATCTCGGGGGCATCTTCTCTAAGCCTTGGAAGCCAAA GAAGACCCGGGACATAACAGAACCTTTGATCACAGCAGATAAACCATCCAAACTGGGATTAGCTCCTAAAGGACGTTCAGCTATTACAACACCTCCTCCT GAACCAACAAATGCCCTGCAGGAAGTTGAGGTAGAGAAGGCAAAGCAAGATGATGCGCTTTCAGATTTAAGCAACATCTTGGGTGATTTAAAAGGCACGG CAGTTGATATGGGAAGTGAACTTGACAGGCAAAATAAGGCCCTTGATCACCTTGGTGATGATGTGGATGAGCTGAACTCTCGAGTGAAAGGAGCTAATCA ACGTACACGTCATTTGCTTGGGAAGTGA
AA sequence Show only first row Show all	>Potri.010G160350.1 pacid=42799794 polypeptide=Potri.010G160350.1.p locus=Potri.010G160350 ID=Potri.010G160350.1.v4.1 annot-version=v4.1 MFGFGKSPANNKATKQSSVNPPASSTSNPFDSDDESNAKQTLHLGKRASSESMLNVLDNAFDDKDRYKNDFRDSGGLENQSVQELEKYAAYKAEETTNSV NNCLRIAEDIKQDATRTLDSLVLKFYKDNVILFQLSAWQENPQQGKKNGEKLLNNLGGIFSKPWKPKKTRDITEPLITADKPSKLGLAPKGRSAITTPPP EPTNALQEVEVEKAKQDDALSDLSNILGDLKGTAVDMGSELDRQNKALDHLGDDVDELNSRVKGANQRTRHLLGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.010G160350 [exp]	0	1
AT4G24710			P-loop containing nucleoside t...		Potri.015G084900 [exp]	17.54	0.6992
AT4G01270			RING/U-box superfamily protein...		Potri.014G089800 [exp]	20.85	0.6938
					Potri.011G126600 [exp]	25.09	0.7026
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Potri.004G085500 [exp]	27.56	0.6651
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.007G026700 [exp]	37.29	0.6743	CHR904,SOM1.2
AT2G22610			Di-glucose binding protein wit...		Potri.002G110600 [exp]	61.72	0.6696
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	98.94	0.6351
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Potri.018G112500 [exp]	161.42	0.6158
					Potri.005G070800 [exp]	242.44	0.5589
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.004G064600 [exp]	258.76	0.5745

Compare expression of checked genes

Potri.010G160350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.