Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13900 903 / 0 Purple acid phosphatases superfamily protein (.1) AT2G03450 882 / 0 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT1G13750 242 / 2e-71 Purple acid phosphatases superfamily protein (.1) AT5G50400 220 / 3e-63 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 212 / 4e-60 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT3G52780 135 / 4e-34 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 123 / 7e-30 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 122 / 8e-30 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 112 / 2e-26 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT4G13700 110 / 1e-25 ATPAP23, PAP23 purple acid phosphatase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202200 [exp] 236 / 5e-69 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 225 / 7e-65 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.008G096000 [exp] 218 / 1e-62 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158400 [exp] 218 / 2e-62 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158250 [exp] 216 / 1e-61 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 213 / 1e-60 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 208 / 8e-59 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.011G138200 [exp] 132 / 6e-33 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 124 / 4e-30 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037091 [exp] 978 / 0 AT1G13900 899 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10026652 [exp] 895 / 0 AT1G13900 875 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10004661 [exp] 888 / 0 AT1G13900 860 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036895 [exp] 355 / 3e-118 AT1G13900 311 / 8e-110 Purple acid phosphatases superfamily protein (.1) Lus10036894 [exp] 302 / 4e-99 AT1G13900 266 / 1e-85 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 240 / 3e-70 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 227 / 2e-65 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019771 [exp] 221 / 1e-63 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 221 / 2e-63 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10036904 [exp] 207 / 2e-58 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G160500.1 pacid=42799079 polypeptide=Potri.010G160500.1.p locus=Potri.010G160500 ID=Potri.010G160500.1.v4.1 annot-version=v4.1 ATGAAGCTCCCTATCCTCCTCCTCCTCCTCCTCCTCTCCCTCATCACTCAAACTTCCCTCTCCAAAGTCACCATCTCCGTGACTCCAACAACCCTCCAGA AATCCGGTGACACAGTAACCATTTCCTGGTCCAACGTTGATTCACCTTCCAAACTCGACTGGCTCGGGCTCTATTCACCTCCTGACTCACCTCACGACCA CTTCATTGGCTACAAGTTCCTTTCTTCCTCTCCTTCATGGCAATCCGGGTCGGGTTCCATTTCCTTGCCCATCACCAACCTCCGCTCCAATTACTCTTTC CGGATCTTCCACTGGACCGAATCCGAAATCAACCCCAAACGCCATGACCATGATCACAACCCCCTCCCTGGGACGGCCCATTTTCTGGCGGAGTCGGATG TTGTCGGGTTCGAGTCGGGTCATGGGCCAGAGCAGATCCATTTGGCATATACGGATGATGAGGACGAGATGAGGGTGATGTTTGTGGTGGGTGATGGAGA GGAGAGGAGTGTGAAGTGGGGAGAGAGGGACGGGGAGTGGAGTCACGTGAGTGGGGCACGTGTGGTGAGGTACGAAAGGGAGGATATGTGTGATGCTCCG GCAAATGGGAGTATTGGGTGGAGAGATCCGGGTTGGATCCATGATGGGGTAATGAAGGATTTGAAGAAAGGTGTTAGGTATTATTATCAGGTTGGAAGCG ACTCTAAGGGTTGGAGCACAACTAGGAGCTTTGTCTCTCGGAATGGAGACTCGGATGAAACAATAGCCTTCCTGTTTGGGGACATGGGAACTTCAACACC ATATGCTACCTTTATCCGTACACAAGATGAAAGCATATCAACCATGAAGTGGATCCTCCGAGACATAGAAGCTATTGGTGACAAGCATGCTTTTGTTTCT CATATAGGAGATATCAGCTATGCAAGAGGGTACTCATGGTTGTGGGACCATTTTTTTACCCAAGTGGAACCTGTTGCTTCCAAAGTGCCATACCATGTGT GCATTGGTAATCATGAGTACGATTGGCCCTTACAGCCCTGGAAACCAGATTGGGCCAATGCAGTTTACGGAACTGATGGTGGTGGTGAATGTGGGGTTCC TTACAGCCTTAAATTTAACATGCCAGGGAACTCTTCAGACTCAACTGGGACCCGTGCTCCTGCAACCCGAAACCTTTACTACTCTTTTGACACAGGGGCT GTACATTTTGTGTACATATCAACTGAGACCAATTTTGTTGCTGGGAGCAGCCAATATAACTTTATAAAGCAAGATCTGGAATCAGTTGACCGGAGCAAGA CTCCTTTTGTGGTAGTCCAAGGGCACAGACCAATGTATACTACTAGCAATGAAAACAGGGATGCCCCAATGAGGAACAAAATGCTTGAGCACTTGGAACC TTTGTTTACGAAATACAATGTTACCCTTGCACTGTGGGGTCATGTGCATAGATACGAAAGGTTTTGTCCAGTGAATAACTTCATCTGCGGAAGCACTTGG AAGGGATTTCCAGTCCATGCTGTGATTGGCATGGCAGGACAAGACTGGCAGCCCATCTGGGAGCCAAGATCAGACCACCCAAATGATCCAATTTTTCCAC AGCCAGCCAGGTCTATGTTCCGTGGGGGGGAGTTCGGGTACACCAAATTGGTTGCCACAAAGGAGAAGCTAACACTTACTTATGTAGGTAACCATGATGG AAAGATGCACGATATGGTTGAGTTTTTGGCATCTGGAGAAGTTCTCAGTGGTGATGACAGCATTAGTGTGGATGCTGGAGCCAGGATTGGGGTGGTTGAT TCTACGTTCTCATGGTATGTCAAGGGGGCAAGTGTTCTTGTCCTTGGGGCTTTTGTGGGCTATATTCTTGGCTACGCATCCCATTCCAGGAAGCAAAATG GTAACAAGGCCAGCTGGACTCCTGTGAAAAGTGAGGATATATGA
AA sequence Show only first row Show all	>Potri.010G160500.1 pacid=42799079 polypeptide=Potri.010G160500.1.p locus=Potri.010G160500 ID=Potri.010G160500.1.v4.1 annot-version=v4.1 MKLPILLLLLLLSLITQTSLSKVTISVTPTTLQKSGDTVTISWSNVDSPSKLDWLGLYSPPDSPHDHFIGYKFLSSSPSWQSGSGSISLPITNLRSNYSF RIFHWTESEINPKRHDHDHNPLPGTAHFLAESDVVGFESGHGPEQIHLAYTDDEDEMRVMFVVGDGEERSVKWGERDGEWSHVSGARVVRYEREDMCDAP ANGSIGWRDPGWIHDGVMKDLKKGVRYYYQVGSDSKGWSTTRSFVSRNGDSDETIAFLFGDMGTSTPYATFIRTQDESISTMKWILRDIEAIGDKHAFVS HIGDISYARGYSWLWDHFFTQVEPVASKVPYHVCIGNHEYDWPLQPWKPDWANAVYGTDGGGECGVPYSLKFNMPGNSSDSTGTRAPATRNLYYSFDTGA VHFVYISTETNFVAGSSQYNFIKQDLESVDRSKTPFVVVQGHRPMYTTSNENRDAPMRNKMLEHLEPLFTKYNVTLALWGHVHRYERFCPVNNFICGSTW KGFPVHAVIGMAGQDWQPIWEPRSDHPNDPIFPQPARSMFRGGEFGYTKLVATKEKLTLTYVGNHDGKMHDMVEFLASGEVLSGDDSISVDAGARIGVVD STFSWYVKGASVLVLGAFVGYILGYASHSRKQNGNKASWTPVKSEDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13900			Purple acid phosphatases super...		Potri.010G160500 [exp]	0	1
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	2.44	0.9394	Pt-CESA2.1
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Potri.011G066100 [exp]	4.00	0.9032
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.004G059600 [exp]	4.00	0.9242	CESA.2
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.001G197600 [exp]	5.83	0.8528
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	6.70	0.9197
AT3G49880			glycosyl hydrolase family prot...		Potri.005G148800 [exp]	7.74	0.8088
AT1G07120			unknown protein		Potri.001G279000 [exp]	10.24	0.9012
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G198250 [exp]	12.40	0.8725
AT1G07120			unknown protein		Potri.009G073600 [exp]	14.42	0.8838
AT5G55970			RING/U-box superfamily protein...		Potri.011G094800 [exp]	14.69	0.8664

Compare expression of checked genes

Potri.010G160500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.