Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61240 517 / 0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G13910 445 / 4e-158 Leucine-rich repeat (LRR) family protein (.1) AT5G46330 155 / 5e-42 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G35710 149 / 1e-39 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 147 / 5e-39 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT3G11080 146 / 6e-39 AtRLP35 receptor like protein 35 (.1) AT4G20140 143 / 7e-38 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G36180 143 / 9e-38 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 142 / 3e-37 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT5G44700 141 / 3e-37 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093400 [exp] 568 / 0 AT5G61240 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.006G014232 [exp] 151 / 1e-40 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 151 / 1e-40 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G124300 [exp] 149 / 6e-40 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.018G045500 [exp] 148 / 2e-39 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G237400 [exp] 146 / 9e-39 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G065400 [exp] 145 / 2e-38 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G008375 [exp] 144 / 4e-38 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008100 [exp] 143 / 8e-38 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037108 [exp] 528 / 0 AT5G61240 550 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10026651 [exp] 526 / 0 AT5G61240 549 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10004662 [exp] 508 / 0 AT5G61240 543 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10036961 [exp] 472 / 4e-169 AT5G61240 488 / 1e-175 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10008712 [exp] 152 / 5e-41 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 151 / 2e-40 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10027688 [exp] 149 / 9e-40 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038488 [exp] 142 / 2e-37 AT5G46330 726 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10023681 [exp] 142 / 2e-37 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10006045 [exp] 142 / 3e-37 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G160700.3 pacid=42798255 polypeptide=Potri.010G160700.3.p locus=Potri.010G160700 ID=Potri.010G160700.3.v4.1 annot-version=v4.1 ATGGCGCGTCCATCACTCTCCCTCCCTCTCATTCTCATTTTCCCTCTTCTTTTCCATCTTGCTCTTGCCAAAACCCTTAAACGCGACGTGAAGGCATTGA ATGAAATAAAGGCATCTCTAGGCTGGAGAGTGGTATACGCTTGGGTCGGCGACGATCCTTGTGGTGACGGTGACCATCCGCCGTGGTCTGGTGTCACATG CTCTACTGTAGGAGATTATAGAGTCGTCACCGAATTGGAAGTATACGCGGTATCTATTGTGGGGCCATTTCCTACTGCTGTAACGAATTTGCTGGATCTT ACTAGACTGGATCTTCACAATAACAAGCTCACAGGGCCCATTCCTCCACAAATTGGCCGATTGAAGCGTCTTAAGATACTTAATTTGAGGTGGAATAAAC TACAAGATGTTATTCCTCCCGAAATTGGTGAACTGAAGAGTTTAACTCATCTTTATCTGAGTTTCAATGCTTTCAAAGGAGAAATCCCCAAGGAGCTTGC AATTCTTCCTGAGCTTCGGTATCTTTATCTACATGAGAATCGCTTTTCTGGGCGAATTCCTGCAGAGCTGGGGACACTGAAAAATCTTCGGCACCTTGAT GTTGGCAACAATCATTTGGTGGGTACTATAAGGGAACTAATACGTCTTGATGGTTGCTTCCCTGCTCTTCGCAACCTTTATTTAAATGATAATTATCTTA CTGGAGGAGTCCCTGCACAACTTTCAAACCTGACCAGCTTGGAGATCTTGCACCTATCACACAATAGAATGACTGGAATAATACCTGTTGGGCTTGCTCA TATGCCTAGATTGACTTACTTGTACTTAGATCACAACAATTTTAATGGGAGAATTCCTGACGCCTTCTATAAGCATCCATATTTGAAAGAATTGTATATC GAAGGAAATGCATTCAAGCCAGGTGTAAACCCAATAGGTGTTCACAAAGTCCTTGAAGTGTCTGATACCGAGTTTGTAGTTTAG
AA sequence Show only first row Show all	>Potri.010G160700.3 pacid=42798255 polypeptide=Potri.010G160700.3.p locus=Potri.010G160700 ID=Potri.010G160700.3.v4.1 annot-version=v4.1 MARPSLSLPLILIFPLLFHLALAKTLKRDVKALNEIKASLGWRVVYAWVGDDPCGDGDHPPWSGVTCSTVGDYRVVTELEVYAVSIVGPFPTAVTNLLDL TRLDLHNNKLTGPIPPQIGRLKRLKILNLRWNKLQDVIPPEIGELKSLTHLYLSFNAFKGEIPKELAILPELRYLYLHENRFSGRIPAELGTLKNLRHLD VGNNHLVGTIRELIRLDGCFPALRNLYLNDNYLTGGVPAQLSNLTSLEILHLSHNRMTGIIPVGLAHMPRLTYLYLDHNNFNGRIPDAFYKHPYLKELYI EGNAFKPGVNPIGVHKVLEVSDTEFVV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.010G160700 [exp]	0	1
AT4G24840			unknown protein		Potri.015G094000 [exp]	3.87	0.9448
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	5.29	0.9293
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	6.92	0.9341
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.017G086900 [exp]	9.32	0.9041
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	10.39	0.9325
AT4G35335			Nucleotide-sugar transporter f...		Potri.016G113200 [exp]	12.64	0.9192
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.019G037600 [exp]	15.42	0.9031
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	17.00	0.9099	Pt-SAH7.2
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	18.00	0.8936
AT5G07720			Galactosyl transferase GMA12/M...		Potri.015G061800 [exp]	18.00	0.8694

Compare expression of checked genes

Potri.010G160700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.