Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61250 561 / 0 ATGUS1 glucuronidase 1 (.1.2) AT5G07830 557 / 0 ATGUS2 glucuronidase 2 (.1) AT5G34940 528 / 0 ATGUS3 glucuronidase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049100 [exp] 571 / 0 AT5G07830 731 / 0.0 glucuronidase 2 (.1) Potri.018G121500 [exp] 552 / 0 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 517 / 5e-180 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 516 / 1e-179 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036963 [exp] 729 / 0 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10004664 [exp] 726 / 0 AT5G07830 519 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 700 / 0 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10037109 [exp] 627 / 0 AT5G61250 503 / 7e-175 glucuronidase 1 (.1.2) Lus10036962 [exp] 625 / 0 AT5G61250 501 / 8e-174 glucuronidase 1 (.1.2) Lus10015737 [exp] 577 / 0 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 568 / 0 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 565 / 0 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 563 / 0 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10008823 [exp] 520 / 0 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF03662 [poplar] [flax] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G160800.2 pacid=42797797 polypeptide=Potri.010G160800.2.p locus=Potri.010G160800 ID=Potri.010G160800.2.v4.1 annot-version=v4.1 ATGGCTGGCCTAAGACTTGCTGTGTCTTGGATTCTTGCATCGCTGTGCTTCTCTTCTTTATGTGCAGCAGATGATGTGAAGGTTTTTGTTCAAGGGGTAA CTTCCATAGCGAAAACCGATGATAATTTTATATGTGCAACTTTAGATTGGTGGCCTAGTGAAAAGTGCGATTACAATCAGTGCCCATGGGGGAAGGCTGG CCTCCTCAATCTGGATTTGAACAACAAGATTCTGGCTAATGCTATCAAGGCATTTGATCCTCTGAGAATCAGACTTGGAGGCTCATTGCAAGATCAGTTG GTTTATCAAGTCGGTGACTTCATTAAAAAATTCCCTCATTTCAAGAAACAAGATGATGGTTTATTTGGATTCAGCAAAGGTTCTCTGCCCATGGATAGAT GGGATCAGCTCAATGACTTGTTTAAGCAAACAAATGCTAAAATCACATTTGGCTTAAATGCCCTTATTGGGAAGAGGAAATCTGACAATTCTACACTTTG GGTTGGTGAATGGAACTCAAAAAATGCCCGAGATTTCATGAAATATACTGCATCAAAGGGATACAAGATTGATTCCTATGAATTAGGAAATGAGTTGTGT GCATCTGGGGTATCTGCAAGACTGGAGGCTGACCAGTATGCTAAAGATATTATTCAACTTAAAGAAATAGTGAAGGAGCTGTACCCAGATCGCGAGACAC AGCCTAGGGTGTTGGGCCCTGCTGGTTTTTACGACACTGAATGGTTTAAAACCTTCCTTGAGGTCTCAGGACCACATGCTGTCGATGGAGTAACCCACCA TATATACAATCTTGGTGCAGGTGTCGATAAAACCCTGATCAACAAGATTCAGGATCCATATTTCCTGGATGAAATAGCAGAAACATTCAAAGACCTTGAA AATGTTGTCAAGGAATTTGGTCCGTGGGCAGGACCATGGGTTGGGGAATCTGGTGGTGCTTATAACAGTGGTGGCAAGGATGTCTCGCATACTTTTGTTA ATGGATTTTGGTACCTGGATCAACTAGGCATGACAGCAACCTTCAATCATAAGGTCTACTGCAGACAGACCCTCATTGGAGGAAACTATGGTCTGCTTAA CACTACATCCTTCATCCCAAATCCAGACTATTATGGTGCACTTCTGTGGCATCGCTTAATGGGAAAGACTGTGCTCGCTACCAATCATTTTGGCTCCCCA TATTTGAGAACATACACTCATTGTTCAAAGCAGAAGCCTGGCATCACAATGCTTATCATTAACATGTCAAACTCCACTTCCATTGATGTTTCTGTCACCA ATGACGAAAACAAGTACCCACATAATTACAGAATGACTGTTAATGGTTCAAATCAAAGAGAAGAGTATCATTTGACCCCAAAAGATGGCAACATCCAGAG TGATGTGGTACTGCTGAATGGAACTCCTTTGCAGCTTACAAGTTCTCAAGACATTCCTTCACTGAGTCCAATGATTGTTGATTCTTCTTCCCCGATCAGA GTCGCCCCTGATTCAATAGTTTATGTTACTATTAGAGACTTCAAAGCTCCTGCATGCGCATAG
AA sequence Show only first row Show all	>Potri.010G160800.2 pacid=42797797 polypeptide=Potri.010G160800.2.p locus=Potri.010G160800 ID=Potri.010G160800.2.v4.1 annot-version=v4.1 MAGLRLAVSWILASLCFSSLCAADDVKVFVQGVTSIAKTDDNFICATLDWWPSEKCDYNQCPWGKAGLLNLDLNNKILANAIKAFDPLRIRLGGSLQDQL VYQVGDFIKKFPHFKKQDDGLFGFSKGSLPMDRWDQLNDLFKQTNAKITFGLNALIGKRKSDNSTLWVGEWNSKNARDFMKYTASKGYKIDSYELGNELC ASGVSARLEADQYAKDIIQLKEIVKELYPDRETQPRVLGPAGFYDTEWFKTFLEVSGPHAVDGVTHHIYNLGAGVDKTLINKIQDPYFLDEIAETFKDLE NVVKEFGPWAGPWVGESGGAYNSGGKDVSHTFVNGFWYLDQLGMTATFNHKVYCRQTLIGGNYGLLNTTSFIPNPDYYGALLWHRLMGKTVLATNHFGSP YLRTYTHCSKQKPGITMLIINMSNSTSIDVSVTNDENKYPHNYRMTVNGSNQREEYHLTPKDGNIQSDVVLLNGTPLQLTSSQDIPSLSPMIVDSSSPIR VAPDSIVYVTIRDFKAPACA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Potri.010G160800 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G036600 [exp]	2.00	0.8894
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.002G064300 [exp]	3.87	0.8385	SAUR61
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Potri.004G000600 [exp]	7.93	0.8786
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183000 [exp]	12.96	0.8295
AT4G31980			unknown protein		Potri.003G209500 [exp]	13.41	0.8563
AT4G21520			Transducin/WD40 repeat-like su...		Potri.011G043000 [exp]	14.42	0.8381
AT1G66920			Protein kinase superfamily pro...		Potri.015G018600 [exp]	17.23	0.8402
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.007G122800 [exp]	17.88	0.8352
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	18.33	0.8390	ENOD8.2
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.016G137350 [exp]	19.59	0.8276

Compare expression of checked genes

Potri.010G160800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.