Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13920 99 / 1e-23 Remorin family protein (.1) AT1G69325 74 / 3e-16 Remorin family protein (.1) AT5G61280 73 / 1e-14 Remorin family protein (.1) AT1G67590 54 / 7e-08 Remorin family protein (.1.2) AT2G02170 51 / 5e-07 Remorin family protein (.1.2) AT5G23750 49 / 1e-06 Remorin family protein (.1.2) AT3G61260 46 / 8e-06 Remorin family protein (.1) AT2G41870 45 / 2e-05 Remorin family protein (.1) AT3G48940 44 / 3e-05 Remorin family protein (.1) AT1G30320 44 / 0.0001 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093300 [exp] 281 / 4e-93 AT1G13920 80 / 1e-16 Remorin family protein (.1) Potri.015G049700 [exp] 95 / 7e-23 AT5G61280 113 / 2e-30 Remorin family protein (.1) Potri.008G178300 [exp] 53 / 1e-07 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G056800 [exp] 50 / 7e-07 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.006G053200 [exp] 45 / 3e-05 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.014G081300 [exp] 42 / 0.0001 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.016G054400 [exp] 41 / 0.0008 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.015G143600 [exp] 40 / 0.0008 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.002G157700 [exp] 40 / 0.001 AT3G61260 167 / 2e-52 Remorin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004665 [exp] 133 / 3e-36 AT1G13920 96 / 4e-22 Remorin family protein (.1) Lus10026649 [exp] 114 / 4e-29 AT1G13920 97 / 2e-22 Remorin family protein (.1) Lus10037111 [exp] 100 / 4e-24 AT1G13920 91 / 4e-21 Remorin family protein (.1) Lus10036964 [exp] 96 / 1e-22 AT1G13920 87 / 2e-19 Remorin family protein (.1) Lus10034714 [exp] 66 / 4e-12 AT5G61280 98 / 5e-24 Remorin family protein (.1) Lus10021650 [exp] 62 / 3e-10 AT2G47210 552 / 0.0 myb-like transcription factor family protein (.1) Lus10038522 [exp] 45 / 3e-05 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10014785 [exp] 44 / 3e-05 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10008477 [exp] 45 / 4e-05 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10027460 [exp] 44 / 4e-05 AT3G61260 192 / 2e-62 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.010G160900.1 pacid=42798631 polypeptide=Potri.010G160900.1.p locus=Potri.010G160900 ID=Potri.010G160900.1.v4.1 annot-version=v4.1 ATGGAGAATATGCTAAAGCAAGTCAGGGTGAGATTTTCTGGACAGGAAAAACCAGAAGAGCCTCGAAGCGCCAGACAAAGAAGAATTCCATCCCTTAAGA CTCCATCCTTCAAAGACAATACTCAAAACAAGAGACCTCAGAACTGGTTCCGGAGACAATTTTCTGGACAAACGAATCAAGATTATGATTCCAATAGAAC AGAGCAGGCAGTTGCTGTGGCAGCGGCGGCTAATGCCATAACATCGTTGAACGCATCGAGCATCCCGGAACAGAAAAAGATCAGCAAGGGACCTGAGACT TCAATGACCCAGGCTGACAGAAAAAGGGAAGGATTGGCAGGTTTAATCTCAGAATCTGGTAGGATATCTAAACAATTTTCAGGTAAAGGTTCGAAAAGCC AAGATACGGAGGTGCCAGAAACAGCTACCAAAGAAAAAACAACTAGCGCTGCTGCCCCATGGGTTAAAAGGACCTTAACACCTACTGACAAGCCTGCTCC ATCAATGAAGAAAACCCCAACGTCCAATGAAAGTGCGGAGCCTATGACTGACGTGCTTCCTATAAAACCAAAAATTACAGTGCCAAAGCCTGAACTGCCT CCCACAAGCAAGCCTGCAATCCCACCGACAAGACCTGCAATAGAAGACGGGACAGATGCAGATGCTTGGGAGAGAGCTGAATTGTCTAAGATCCAAAAGA GGTACGAGCAGATGAATGCCACAATACTTTCCTGGGAGAACAAGAAGAAAGAAAAGGCCAGAAAAAGACTTCGAAAAACAGAGAGTGACCTGGAGCGAAT ACGGTCAAGAGCCTTGAAACAATTTCATGATGATATTGTTGATATTGATCAGATTGCAGGAGGAGCAAAAGCAAAGGCAGCAGAAAGGCAAAGAAATGAA GAGTTCAAGGCAAAAGAAAAGGCAAATACAATCAGAAAAACAGGAAAGCTTCCTCGGACATGTTTCTGCTTTTAA
AA sequence Show only first row Show all	>Potri.010G160900.1 pacid=42798631 polypeptide=Potri.010G160900.1.p locus=Potri.010G160900 ID=Potri.010G160900.1.v4.1 annot-version=v4.1 MENMLKQVRVRFSGQEKPEEPRSARQRRIPSLKTPSFKDNTQNKRPQNWFRRQFSGQTNQDYDSNRTEQAVAVAAAANAITSLNASSIPEQKKISKGPET SMTQADRKREGLAGLISESGRISKQFSGKGSKSQDTEVPETATKEKTTSAAAPWVKRTLTPTDKPAPSMKKTPTSNESAEPMTDVLPIKPKITVPKPELP PTSKPAIPPTRPAIEDGTDADAWERAELSKIQKRYEQMNATILSWENKKKEKARKRLRKTESDLERIRSRALKQFHDDIVDIDQIAGGAKAKAAERQRNE EFKAKEKANTIRKTGKLPRTCFCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13920			Remorin family protein (.1)		Potri.010G160900 [exp]	0	1
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.012G018700 [exp]	2.00	0.8954
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G087100 [exp]	2.82	0.8832
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	3.46	0.9192
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G040700 [exp]	3.87	0.9027
AT2G39490			F-box family protein (.1)		Potri.008G050800 [exp]	5.47	0.8672
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Potri.016G059150 [exp]	6.00	0.8731
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Potri.002G111700 [exp]	6.32	0.8613
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.018G091600 [exp]	7.48	0.8847
AT3G12970			unknown protein		Potri.005G098300 [exp]	9.79	0.8585
AT5G06850			C2 calcium/lipid-binding plant...		Potri.016G049300 [exp]	10.39	0.8862

Compare expression of checked genes

Potri.010G160900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.