Plant FIBer expression Database

Potri.010G161100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69330 263 / 5e-88 RING/U-box superfamily protein (.1)
AT3G29270 208 / 6e-67 RING/U-box superfamily protein (.1.2)
AT1G74370 173 / 3e-53 RING/U-box superfamily protein (.1)
AT1G21651 47 / 7e-06 zinc ion binding (.1)
AT1G21650 47 / 8e-06 SECA2 Preprotein translocase SecA family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G090000
[exp]
244 / 6e-81 AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2)
Potri.004G125400
[exp]
234 / 5e-77 AT3G29270 283 / 4e-96 RING/U-box superfamily protein (.1.2)
Potri.012G067200
[exp]
207 / 3e-66 AT3G29270 270 / 3e-91 RING/U-box superfamily protein (.1.2)
Potri.019G066500
[exp]
50 / 1e-06 AT1G21651 716 / 0.0 zinc ion binding (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004666
[exp]
251 / 1e-83 AT1G69330 272 / 1e-91 RING/U-box superfamily protein (.1)
Lus10026648
[exp]
252 / 9e-81 AT1G69330 275 / 2e-89 RING/U-box superfamily protein (.1)
Lus10003473
[exp]
218 / 3e-70 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2)
Lus10005220
[exp]
217 / 3e-70 AT3G29270 317 / 3e-109 RING/U-box superfamily protein (.1.2)
Lus10015732
[exp]
211 / 2e-67 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2)
Lus10030699
[exp]
199 / 3e-63 AT3G29270 310 / 5e-107 RING/U-box superfamily protein (.1.2)
Lus10028560
[exp]
46 / 2e-05 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF13445 zf-RING_UBOX RING-type zinc-finger
Representative CDS sequence
>Potri.010G161100.3 pacid=42797667 polypeptide=Potri.010G161100.3.p locus=Potri.010G161100 ID=Potri.010G161100.3.v4.1 annot-version=v4.1
ATGATGTGGAAGTTTGCGTCGAATGCCCTCACTTCCATTGGACTGAAGAAAAGCTCAAGAGAGGCAAATCGAGCTAATTTAGAGTTTTCAGATGATGAGG
TGTGTTCGAATGTTAGTGGGGAAGAAGGACTTGAATGCCCGATATGCTGGGAATCTTTCAACATTGTTGAGAATGTACCTTATGTCTTATGGTGTGGTCA
TTCCCTCTGTGAAAACTGTGTCTTGGGGCTTCAGTGTGCTGTGTTGGGATTCTCTATGCAAAAAATAAGGATTCCATTCTTTGTTTCCTGCCCCTGGTGT
CAGTTGTTGTCATTCCGACTAGTCTATCAGGGGAGTCTGAAGTTCCCTCGCAAGAATTTCTTTCTCCTCTGGATGGTTCAAAAATTGAACGGTGACAGGG
TGAAGTTTAGTTCCTCCCTGTGCACTAATGACAATCAACCAATTTGGTCCCCGAAAGGAAAAATAATTTTTGGACATCAATTTAGCAACAGTAGCCTCAG
TAGGGCTCCATATAATCAGGGACAGAGTCAGTTGGGCTTTAATGGAGATGGTGGTAGCAGAAGTGGAGAGAGGAATCACTCTTCTCTTCACAAATCTCTG
GATTATTTTCTTGACTTCACAACGAAGTTTCCGCTGGTCATCATATTTCTACTAATTGTTCTTTTTGTGGTACCTATCAGTGCTGTCATTGTACTTCTTT
ACTTGTTAGTGACAGTTCTTTTTGCACTACCATCTTTCCTGGTATTGTACTTTGCATACCCCACTTTGGCTAGGCTGGTGAAAGAGATAGCCTCTTGA
AA sequence
>Potri.010G161100.3 pacid=42797667 polypeptide=Potri.010G161100.3.p locus=Potri.010G161100 ID=Potri.010G161100.3.v4.1 annot-version=v4.1
MMWKFASNALTSIGLKKSSREANRANLEFSDDEVCSNVSGEEGLECPICWESFNIVENVPYVLWCGHSLCENCVLGLQCAVLGFSMQKIRIPFFVSCPWC
QLLSFRLVYQGSLKFPRKNFFLLWMVQKLNGDRVKFSSSLCTNDNQPIWSPKGKIIFGHQFSNSSLSRAPYNQGQSQLGFNGDGGSRSGERNHSSLHKSL
DYFLDFTTKFPLVIIFLLIVLFVVPISAVIVLLYLLVTVLFALPSFLVLYFAYPTLARLVKEIAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69330 RING/U-box superfamily protein... Potri.010G161100
[exp]
0 1
AT2G23090 Uncharacterised protein family... Potri.002G120100
[exp]
3.16 0.7764
AT2G46410 MYB CPC CAPRICE, Homeodomain-like supe... Potri.017G037000
[exp]
3.46 0.7645 MYB174
AT1G09660 RNA-binding KH domain-containi... Potri.004G225900
[exp]
6.00 0.6992
AT5G47900 Protein of unknown function (D... Potri.009G136700
[exp]
8.71 0.7520
AT3G27520 unknown protein Potri.001G343200
[exp]
9.79 0.7348
AT5G08170 ATAIH, EMB1873 EMBRYO DEFECTIVE 1873, AGMATIN... Potri.015G055300
[exp]
10.19 0.7695
AT1G69390 ARC12, ATMINE1 accumulation and replication o... Potri.010G162600
[exp]
16.09 0.7370
AT3G21820 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone... Potri.017G038700
[exp]
19.07 0.6955 SDG943
AT5G49320 Protein of unknown function (D... Potri.010G140400
[exp]
20.19 0.7413
AT1G55790 Domain of unknown function (DU... Potri.006G002700
[exp]
25.19 0.7435

Potri.010G161100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.