Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03380 787 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 470 / 3e-155 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 417 / 2e-134 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 415 / 2e-133 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 404 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16610 400 / 6e-130 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G39530 395 / 6e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 395 / 2e-125 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G01580 388 / 2e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 389 / 1e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191000 [exp] 460 / 3e-151 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 429 / 2e-138 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G058700 [exp] 428 / 3e-138 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 426 / 9e-138 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 419 / 4e-137 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 414 / 9e-134 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G164900 [exp] 409 / 2e-131 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 413 / 5e-131 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G178200 [exp] 406 / 1e-130 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030418 [exp] 733 / 0 AT2G03380 666 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 484 / 4e-160 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 438 / 8e-143 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025009 [exp] 411 / 2e-132 AT1G15510 1020 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 409 / 2e-130 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 404 / 7e-129 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018492 [exp] 395 / 9e-129 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 393 / 1e-126 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 392 / 2e-125 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10026641 [exp] 377 / 1e-124 AT2G03380 354 / 1e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.010G161800.1 pacid=42800213 polypeptide=Potri.010G161800.1.p locus=Potri.010G161800 ID=Potri.010G161800.1.v4.1 annot-version=v4.1 ATGAACAAAAATGGCGGGGAACAACCACCTCAACTTATATTATATTATATTTATGTATACACAAAAATGGTAAAACTAATCTCTCAATTACACAAAAACA TCTGCAAAAAACCTTTCTACTTTGGATGGATAAATCACAGCTGTGCAACCCATCAACTGCCTTTAGACTACCCACCTCAGGCTCATGTACACCACCAAAA TATGCCTTTGCCCCCAATACTCCACAACTTTTTCTACAGTCTCTGCGACAACATCAATACTCTCATGGAAATGCACGCTTACCTCGTTGTTCAGGGCCTC ACTCGTGATCTTTCATGCAGCACCAAATTGGTTAGCTTGTATGGTTCTTTTGGCCGTCTTGATCTTGCACGCTTGGTGTTTGATACAATACCTCACCCGG ACTTTCTTTCGTGGAAAGTGATCATCAGATGGTATTTTTTGAACAGTGAGTTTCGAGATATTGTTGGGTTTTATAATCGTATGCGAGTGTGCTTAAAAGA GTGTGATAATGTTGTTTTCTCCCATGTTTTAAAGGCATGTAGCGAATCGCGAAATTTTGATGAAGGGAGGAAAGTGCACTGTCAAATTGTCAAGTTTGGG AATCCTGATAGTTTTGTGTTCACTGGTCTTGTGGATATGTATGCCAAGTGTGGGGAAATTGAGTGTTCTCGTTCTGTGTTTGATGAAAATCTTGATAGGA ATGTGTTTTCTTGGAGCTCCATGATTGCTGGCTATGTACAGAATAATCTTGCTCAAGATGGGTTAGTTTTGTTTAATAGAATGAGAGAGGAGTTGATCGA GGCTAATCAAATTACACTAGGGATCTTAGTTCATGCATGTAAAAAGCTCGGAGCTTTGCATCAAGGGAAGTGGCTTCATGGATACTTGATTAAATGTGGT ATTGAACTTGGTTCTTACTTGGTGACAGCTCTTCTAGACTTGTATGCAAAGTGTGGAGTCGTTAGAGATGCTAGGTCTGTGTTTGATGAGCTGCATGGTA TTGATATTGTCTCGTGGACTGCTATGATCGTTGGGTACACCCAGAATGGCTGTCCTGAGGAGGCTTTGAAGTTGTTTTTGCAGAAGGAACAGGTTGCTGT CTTGCCTAATGACGTTACCATCGCAAGTGTGTTTTCATCATGTTCACAGCTGCTGAACTTGAATCTAGGAAGATCAATTCATGGTCTGAGCATTAAGCTC GGGTCACGGGATTCTATTGTCACGAACTCTTTGGTGGATTTTTATGCTAAATGCCAAATGAATAGAGATGCTCGTTATGTATTTGAGACAATTTCAGATA GAGATGTGGTTGCCTGGAATTCCATTATTTCTGCGTTTTCTCAGAATGGTTCTGCATATGAAGCCCTTGAATTGTTTCACCAAATGAGAATGGGATCCGT CTTGCCTGATGCAGTCACCTTAGTGAGTGTCTTGTCAGCTTGTGCTTCCCTTAATGCTCTCCAAGTCGGTTCTTCTTTTCATGCTTACGCGGTAAAGAGA GGTCTTTTATCCTCTAATGTCTATGTTGGCACTGCGCTTTTGACCTTTTATGCCAAATGTGGGGATGCTGAATCTGCTCGTGTTATTTTTGATGGTATGG ACCAGAAGAGCACTGTCACATGGAGTGCAATGATTAGTGGCTATGGAATTCAGGGTAATGGTCGTGGATCCCTTTCAATTTTTGGTGATATGTTGAAGGC AGAATTGAAACCCAATGAAGAGATCTTCACGTCCATTTTATCTGCCTGTAGCCATACAGGGATGATTGGGGAAGGGTGGAGGCTTTTCACTATGATATGT CAGGACTACAACCTAGTGCCTTCAACGAAGCATTATACATGTATGGTTGACCTATTAGCTCGTGCTGGAAGGCTTAAGGAGGCCTTGGACTTCATTCAGA AAATGCCAGTTAAACCAGATGTTAGCTTGTTTGGTGCATTTCTCCACGGTTGCGGACTCCATTCAAGGTTTGATCTTGGAGAGTTGGCAATCAAGAGGAT GCTAGAGCTCCATCCTGGTGAAGCTTGTTACTATGTGCTAATGTGCAATCTGTATGCTTCGGATGCAAGCTGGAGCAAGGTTAAGCAGGTAAGAGAGTTG ATGAAACAGAGAGGGTTGATGAAAACTCCAGGTTGTAGCCTGATGGAGATGGATGTTGATCATGACTTCTCCTTTTCTAGAGCTGCTTCTCTTGCATAG
AA sequence Show only first row Show all	>Potri.010G161800.1 pacid=42800213 polypeptide=Potri.010G161800.1.p locus=Potri.010G161800 ID=Potri.010G161800.1.v4.1 annot-version=v4.1 MNKNGGEQPPQLILYYIYVYTKMVKLISQLHKNICKKPFYFGWINHSCATHQLPLDYPPQAHVHHQNMPLPPILHNFFYSLCDNINTLMEMHAYLVVQGL TRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCG IELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKL GSRDSIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKR GLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMIC QDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVKPDVSLFGAFLHGCGLHSRFDLGELAIKRMLELHPGEACYYVLMCNLYASDASWSKVKQVREL MKQRGLMKTPGCSLMEMDVDHDFSFSRAASLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03380			Pentatricopeptide repeat (PPR)...		Potri.010G161800 [exp]	0	1
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G140800 [exp]	1.00	0.7075
AT1G66345			Pentatricopeptide repeat (PPR)...		Potri.004G090800 [exp]	3.16	0.6403
AT1G71080			RNA polymerase II transcriptio...		Potri.010G114900 [exp]	4.89	0.6045
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Potri.008G070800 [exp]	23.23	0.5677
AT4G35530			phosphatidylinositolglycan-rel...		Potri.018G026700 [exp]	36.46	0.5494
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Potri.008G005101 [exp]	39.49	0.5733
AT4G08850			Leucine-rich repeat receptor-l...		Potri.005G253301 [exp]	45.25	0.4651
AT5G06440			unknown protein		Potri.016G067000 [exp]	71.41	0.5584
AT1G07470			Transcription factor IIA, alph...		Potri.009G036700 [exp]	79.91	0.5331
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.009G098000 [exp]	119.61	0.5239

Compare expression of checked genes

Potri.010G161800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.