Plant FIBer expression Database

Potri.010G162000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13940 437 / 3e-136 Plant protein of unknown function (DUF863) (.1)
AT1G69360 380 / 6e-116 Plant protein of unknown function (DUF863) (.1)
AT1G26620 294 / 6e-85 Plant protein of unknown function (DUF863) (.1)
AT5G07790 55 / 4e-07 unknown protein
AT5G61300 50 / 6e-06 unknown protein
AT5G67390 44 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G092800
[exp]
1619 / 0 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1)
Potri.004G125900
[exp]
322 / 9e-94 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1)
Potri.017G088900
[exp]
303 / 7e-87 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1)
Potri.006G262600
[exp]
52 / 2e-06 AT1G13940 53 / 4e-07 Plant protein of unknown function (DUF863) (.1)
Potri.018G090000
[exp]
51 / 2e-06 AT5G57340 72 / 8e-15 unknown protein
Potri.018G020800
[exp]
50 / 1e-05 AT1G69360 54 / 2e-07 Plant protein of unknown function (DUF863) (.1)
Potri.003G112000
[exp]
49 / 2e-05 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2)
Potri.006G165500
[exp]
48 / 2e-05 AT5G57340 62 / 2e-11 unknown protein
Potri.001G121200
[exp]
49 / 3e-05 AT1G62530 106 / 5e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030419
[exp]
555 / 0 AT1G13940 397 / 1e-121 Plant protein of unknown function (DUF863) (.1)
Lus10026640
[exp]
421 / 2e-131 AT1G13940 323 / 7e-96 Plant protein of unknown function (DUF863) (.1)
Lus10036807
[exp]
303 / 8e-89 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1)
Lus10037122
[exp]
286 / 7e-83 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1)
Lus10021644
[exp]
66 / 2e-10 AT1G13940 105 / 5e-23 Plant protein of unknown function (DUF863) (.1)
Lus10034722
[exp]
64 / 5e-10 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1)
Lus10011080
[exp]
47 / 2e-05 AT5G67390 91 / 7e-23 unknown protein
Lus10019291
[exp]
47 / 3e-05 AT5G67390 95 / 2e-24 unknown protein
Lus10011531
[exp]
46 / 5e-05 AT5G67390 97 / 3e-25 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05904 DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence
>Potri.010G162000.3 pacid=42799289 polypeptide=Potri.010G162000.3.p locus=Potri.010G162000 ID=Potri.010G162000.3.v4.1 annot-version=v4.1
ATGGGAACAAAAGTGCAGTGTGAAAGTTACTTCCCAGGATATTTCCCAATGAGGGATCTTAATGAGGATTCTAACAGTTGTAGCTGGCCTCTCTTTTATG
GAGATAAAACCTTTACAAATGGGCAGTATTACAATGATTACTTGCCAAGGGTCGTTGCAGATGCCTATCCAGCGAATGATAAGGATGTAGTAAAGCGGAC
AATGCTTAAGCATGAGGCCATATTTAGGAAACAGCTCGAAGATCTTCACCGTCTATACAGAATACAAAGGGACCTAATGGATGAAATTAAAAGGAAAGAA
CTACTTAAAAACCGGATACCTGTTGAGACATCATTTTCATCAAGCCCCTTAGCTTCTCAGGTTACATCTGAAGATGCTCAGAAATGGCATATCCTTAGTT
TCCCAATGGCAAATTCAATATGTGCTAGACCATCTGTGTTGGGTGTTGAAGACATTCATTCTCCTTTGAGCTCTATGAAAGGAAGCAGTGCACAAGCGAG
TCCCTTGCCATCCCAAAATGGTGGTGCTTCAAAAGATGTGGAGATTCTGGAGTCCAGGCCATCAAAGTTGAGAAGAAGAATGTTTGATCTTCAGCTTCCA
GCTGATGAGTACATAGACACAGAAGAAGAGGAAAAATTAAGGGATGAAAATGTATCTGGAATTTCAAGTTATCTGCCCAGCAGGAATCATAAAATTGCAC
CTCAGAATGAAATAATTCTTTTTCTTGGCAATGGTGGGAAGAATAATTCACAAGTAGATGCATCAAGATCTGAATCATGTTTAAGGAGCCCAATTAATGT
GGGTGACCTGAACAAGCCTGTTGAGGTTGAAGAGGCAAATGCTTCTGCACATGTTGATCCTCTAGGCTGCGCCTCCTCCCAAGCAGGGAGCCAAGGGCAT
GAACTGGCTTCCAAGCCAAAACAAGAGCTTCTAGGTTTCCCCAAGGAAATTTCAGCAAATTTCCATTACAGGGGTGACAATGAGACTCTCAATATCCCAC
ATATGCAAAATAATGCCAATGGAAAATGCTGGTTTCCTTGTGCACTCGACTCAGGACATAGCAAAAACAACTTGAAGTCTGTTTCTCCAGATCTTCAACC
AGAAAAACCTACCTCTTCACAGCCAATACAAGTTCTGTTCAGTAAAACTCGTGAACCTCCAACCTTCTTTCTAGCTGATCAAGGCAAGATTGATCAGTTG
AGACAGAGAACAGCTTGCGGTTTAGAACTCTCTGAAAGAAATCATGAGATTGCCAATAGTAACTATTCAGAGTCAGTTATTGCTTCTCATAGACCGAGTC
CATATCCAATTGGTCCTCCCTCTGATGTGGGCAAGCCTTGGTGTCAGTCTGTTTCCTCTTGGGAAATGCCTGCTGTTAGCTTAAGCCAGAAATCAATGTC
AGTTCAAATGCACCCATATTTGAATTCATCAGCAACTTTGAGTAGGAGCTCGCAGTCGTCAACTCAGAGCCATGGGTATTTTGGAGACCAACGGAATTAT
AACAGCAATTCTACATCTAACCCAAGCTTTGCGAGTGAAATGCCCAACCGAAATGGATTCTACCATGGGTCCTCATCAGGGTCCAAGGAACCATCAGTTC
GTCTTGCTTCGGGAAACTATGACTATTGGAACTGTGCAAGTACTAATAATGGAGCATCTGAGCACTTCATCAATCACAGTTCAGCAAAGTTCAATAAGAG
TCCAAATTGTATGGACTTGAAGTCTGCTAGAGATGTGAACTTGAATGCATTGGACAGCTCATCTAACAAGGTGGGCATTGAGGTCATAGTTTTAGATAGA
AAGCATGAGGATCATCTTGCAGCATTGCCTTGGCTTAAAGCTAAGCCTGCTTGTAAGTATGAGGGCACTGTGGGGATGGATTTGAATGCAGGGGAATCAA
CTTTCTTACAATCTTCACTGAATCAGTTATCAGATAAAAGTGAAATCGGAAAGGGTCCTAATCAAATAGCAGCTTCGAACATGAAATCGACTAAATGTTC
TAATGTCGTTGAGACCAGTTGTATCCAGGGTAGTGACTCAAGTTGCAGAAAAATTCTTGGCTTTCCAATTTTTGAAAAGCCTCGTATTCCTAAGACTGAG
TTTTCTTCCTTCCCCTCTTCTTCCTTGGCCCTTCCTCAGTTATCGGAAGAAGTGGAAGATAGCAAGAAAAATATGGTGCTTGATATAAACTTACCTTGTG
ATCCAGCTGTACCTGACTTGGCTCAACAGACTGCAGAAGAAGTTGCCGTTGTTGCAAAAGAAGCAGATACAAAAGTTGCCAATTTCAGATTTCATATTGA
TTTGAACTCTTGTATCAGTGATGATGAAACTTCTATGCTGTCTTCTGTTCCAGGCTCCAGTGCAAAGGTGGTTGCAGGAATAGATTTGGAAGCCCCTGCA
GTTCCCGAGAGTGAGGAGAATACCTTTTCCAGAGAAGAAAAGGCACATGAACTGCCTTTACAGTCAACAGAGCACAAAGCTGAAAGCTTGACGGATGAAC
TTATCAGAATAGCAGCCGATGCGATAGTGGCCATTTCATCATCAGGTTACCAGAATCATTTGGATGATGCCACTTGCAACCCACCTGAAGTTTCTATGAC
AGATCCTCTTCATTGGTTTGTGGAGATAGTTTCATCTTGTGGAGAGGATCTAGAGAGCAAATTTGATGCAGTTTTGAGAGCCAAAGATGGTGAAGATAAT
ATGGAGACATCATGGGAATTTATTGATTACTTTGAGTCGATGACTTTGAGATTGATGGAGACCAAGGAAGAAGATTACATGCCCAAGCCTTTGGTTCCAG
AAAACCTGAAACTGGAAGATACAGGAACCACCACTGTACCAACACGAAGCCGAAGGGGGCAGGGAAGAAGAGGAAGGCAGCGGAGGGACTTCCAGAGGGA
CATTCTTCCTGGCCTTGGTTCACTATCAAGACACGAGGTAACAGAAGATCTTCAAACATTTGGAGGGATGATGAGAGCAACTGGTCATCCATGGCATTCA
GGATTAACAAGAAGGAACTCCACTAGAAATGGTTGTGCAAGGGGGAGACGACGCACACAGGTTAGCCCCATGCCTCTGGTGGCAGCAAGCCCACCTTGCA
CTCCACTAGTTCAGCAGCTTCATAATATTGAAGTGGGACTGGAGGATAGAAACCTAACAGGGTGGGGGAAGACAACCAGACGCCCCCGCCGGCAGAGATG
CCCTGCAGGTAATCCTCCATCTCACCCTTTAACCTAA
AA sequence
>Potri.010G162000.3 pacid=42799289 polypeptide=Potri.010G162000.3.p locus=Potri.010G162000 ID=Potri.010G162000.3.v4.1 annot-version=v4.1
MGTKVQCESYFPGYFPMRDLNEDSNSCSWPLFYGDKTFTNGQYYNDYLPRVVADAYPANDKDVVKRTMLKHEAIFRKQLEDLHRLYRIQRDLMDEIKRKE
LLKNRIPVETSFSSSPLASQVTSEDAQKWHILSFPMANSICARPSVLGVEDIHSPLSSMKGSSAQASPLPSQNGGASKDVEILESRPSKLRRRMFDLQLP
ADEYIDTEEEEKLRDENVSGISSYLPSRNHKIAPQNEIILFLGNGGKNNSQVDASRSESCLRSPINVGDLNKPVEVEEANASAHVDPLGCASSQAGSQGH
ELASKPKQELLGFPKEISANFHYRGDNETLNIPHMQNNANGKCWFPCALDSGHSKNNLKSVSPDLQPEKPTSSQPIQVLFSKTREPPTFFLADQGKIDQL
RQRTACGLELSERNHEIANSNYSESVIASHRPSPYPIGPPSDVGKPWCQSVSSWEMPAVSLSQKSMSVQMHPYLNSSATLSRSSQSSTQSHGYFGDQRNY
NSNSTSNPSFASEMPNRNGFYHGSSSGSKEPSVRLASGNYDYWNCASTNNGASEHFINHSSAKFNKSPNCMDLKSARDVNLNALDSSSNKVGIEVIVLDR
KHEDHLAALPWLKAKPACKYEGTVGMDLNAGESTFLQSSLNQLSDKSEIGKGPNQIAASNMKSTKCSNVVETSCIQGSDSSCRKILGFPIFEKPRIPKTE
FSSFPSSSLALPQLSEEVEDSKKNMVLDINLPCDPAVPDLAQQTAEEVAVVAKEADTKVANFRFHIDLNSCISDDETSMLSSVPGSSAKVVAGIDLEAPA
VPESEENTFSREEKAHELPLQSTEHKAESLTDELIRIAADAIVAISSSGYQNHLDDATCNPPEVSMTDPLHWFVEIVSSCGEDLESKFDAVLRAKDGEDN
METSWEFIDYFESMTLRLMETKEEDYMPKPLVPENLKLEDTGTTTVPTRSRRGQGRRGRQRRDFQRDILPGLGSLSRHEVTEDLQTFGGMMRATGHPWHS
GLTRRNSTRNGCARGRRRTQVSPMPLVAASPPCTPLVQQLHNIEVGLEDRNLTGWGKTTRRPRRQRCPAGNPPSHPLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13940 Plant protein of unknown funct... Potri.010G162000
[exp]
0 1
AT5G53150 DNAJ heat shock N-terminal dom... Potri.003G171200
[exp]
3.74 0.8601
AT5G16180 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE ... Potri.017G116700
[exp]
4.24 0.8802
AT3G27700 C3HZnF zinc finger (CCCH-type) family... Potri.001G351532
[exp]
4.89 0.8393
AT3G18110 EMB1270 embryo defective 1270, Pentatr... Potri.017G036400
[exp]
8.66 0.8443
AT3G18290 BTS, EMB2454 embryo defective 2454, BRUTUS,... Potri.012G055100
[exp]
14.69 0.7614
AT2G30780 Tetratricopeptide repeat (TPR)... Potri.016G119600
[exp]
21.16 0.7864
AT3G61800 unknown protein Potri.002G171600
[exp]
21.21 0.7934
AT3G16620 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCO... Potri.004G171600
[exp]
21.90 0.7991
AT3G43240 ARID ARID/BRIGHT DNA-binding domain... Potri.006G135500
[exp]
22.00 0.8145
AT3G16290 EMB2083 embryo defective 2083, AAA-typ... Potri.003G050600
[exp]
23.34 0.8376

Potri.010G162000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.