Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69370 370 / 6e-129 CM-3, CM3 chorismate mutase 3 (.1) AT3G29200 357 / 3e-123 ATCM1, CM1 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) AT5G10870 269 / 5e-90 ATCM2 chorismate mutase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G088700 [exp] 379 / 4e-132 AT3G29200 352 / 2e-121 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Potri.018G019250 [exp] 271 / 1e-90 AT5G10870 303 / 1e-103 chorismate mutase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015378 [exp] 350 / 2e-115 AT3G29185 474 / 2e-162 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) Lus10032998 [exp] 331 / 1e-113 AT3G29200 359 / 2e-124 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10019795 [exp] 273 / 5e-92 AT3G29200 288 / 3e-98 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10007444 [exp] 246 / 1e-80 AT5G10870 310 / 1e-106 chorismate mutase 2 (.1) Lus10014114 [exp] 182 / 6e-57 AT1G69370 199 / 7e-64 chorismate mutase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G162300.1 pacid=42797721 polypeptide=Potri.010G162300.1.p locus=Potri.010G162300 ID=Potri.010G162300.1.v4.1 annot-version=v4.1 ATGGAGTGCAAGCTACTAAATGTTGCTTTTGCTTCTATTTCAAGCCTCAAGACCCCAAGTTCTCTACCACCTCATTCGTATCTCGCCCATCATCAACCAA ACACCCTCAAATTTCTCCAGTCAAAATCTGGAGCTAATGGGCATCATCCTCTTTATGCCTCTTCATCTTTTCGCACAAGATATGCTAAAGAAAGGGTGGA CAGCAGCCAGACCTTGACTCTGGATGCGATAAGGAAGTCTTTAATTTTGCAAGAAGACAGTATAATTTTCAACCTTTTGCTCAGAGCGCAGTATGCTTAC AATGCAAACACTTATAACGATGGTGCTCTATGTATCGGAAGTTTCCATGGGTCTTTGGTCAAGTTCATTGTAAAAGAAACCGAAAGGCTCCATGCTCAGG CGGGGCGGTATAGAAGTCCGGATGAGCACCCGTTCTTCCCAGAAAATTTACCTCACTCAATGCTGCTTCCGTCGCAGTATCCAAAGGTTTTGCATCCTTG TGCTGACTCAATTAATATCAACAAAAAGGTATGGAATATGTATTTTACGGATCTTCTTCCAAAATTGGCCAAAGCTGGAGATGATGACAATTGTGGATCT GCTGCTGTTTGCGACACAGTTTGCTTGCAGGCTCTGTCACGGAGAATTCACTATGGAAAATTTGTGGCCGAGGCTAAATTTCAGGAATCCACTGCTGAAT ACGAAGCTGCTATCAAAGTGCAGGATCGGGCTAGACTCATGGAGTTGTTGACGTATGAAACTGTGGAAGCAGCTGTTAAGAAGAGGGTAGAAATGAAAAC AAGAAAATATGGCCAAGAGGGAAGAATCACCCAGCAGGAAGACGCAGCCGATCCCATATATAAAGTAGAGCCACATTTAGTTGCCCAACTTTACGAGGAT TGGATTATGCCTCTGACAAAAGAAGTTGAGGTTGAATACTTGTTGAGAAGGCTTGACTAA
AA sequence Show only first row Show all	>Potri.010G162300.1 pacid=42797721 polypeptide=Potri.010G162300.1.p locus=Potri.010G162300 ID=Potri.010G162300.1.v4.1 annot-version=v4.1 MECKLLNVAFASISSLKTPSSLPPHSYLAHHQPNTLKFLQSKSGANGHHPLYASSSFRTRYAKERVDSSQTLTLDAIRKSLILQEDSIIFNLLLRAQYAY NANTYNDGALCIGSFHGSLVKFIVKETERLHAQAGRYRSPDEHPFFPENLPHSMLLPSQYPKVLHPCADSININKKVWNMYFTDLLPKLAKAGDDDNCGS AAVCDTVCLQALSRRIHYGKFVAEAKFQESTAEYEAAIKVQDRARLMELLTYETVEAAVKKRVEMKTRKYGQEGRITQQEDAADPIYKVEPHLVAQLYED WIMPLTKEVEVEYLLRRLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69370		CM-3, CM3	chorismate mutase 3 (.1)		Potri.010G162300 [exp]	0	1
					Potri.006G169550 [exp]	1.73	0.8627
AT1G16290			unknown protein		Potri.010G172300 [exp]	4.24	0.8439
AT1G52330			Late embryogenesis abundant (L...		Potri.001G180600 [exp]	9.94	0.8292
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	10.77	0.8290
AT5G10690			pentatricopeptide (PPR) repeat...		Potri.006G274133 [exp]	11.40	0.8105
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Potri.017G088700 [exp]	12.48	0.7803
AT1G17430			alpha/beta-Hydrolases superfam...		Potri.001G168600 [exp]	14.07	0.8144
AT4G27740			Yippee family putative zinc-bi...		Potri.015G009100 [exp]	14.73	0.8138
					Potri.006G267450 [exp]	15.58	0.8127
AT4G20960			Cytidine/deoxycytidylate deami...		Potri.002G158800 [exp]	18.11	0.7653

Compare expression of checked genes

Potri.010G162300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.