Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03350 278 / 9e-97 Protein of unknown function, DUF538 (.1) AT5G01610 185 / 2e-60 Protein of unknown function, DUF538 (.1) AT5G37070 181 / 9e-59 Protein of unknown function, DUF538 (.1) AT3G08890 181 / 9e-59 Protein of unknown function, DUF538 (.1.2) AT5G16380 58 / 2e-10 Protein of unknown function, DUF538 (.1) AT4G02360 56 / 3e-10 Protein of unknown function, DUF538 (.1) AT5G19860 56 / 5e-10 Protein of unknown function, DUF538 (.1) AT1G02813 50 / 3e-08 Protein of unknown function, DUF538 (.1) AT3G07470 45 / 3e-06 Protein of unknown function, DUF538 (.1) AT1G55265 45 / 4e-06 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092500 [exp] 326 / 5e-116 AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1) Potri.016G125300 [exp] 184 / 4e-60 AT3G08890 292 / 8e-103 Protein of unknown function, DUF538 (.1.2) Potri.006G104000 [exp] 184 / 7e-60 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2) Potri.014G127500 [exp] 64 / 3e-13 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 64 / 6e-13 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 64 / 7e-13 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 45 / 4e-06 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 44 / 1e-05 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026639 [exp] 296 / 5e-104 AT2G03350 262 / 1e-90 Protein of unknown function, DUF538 (.1) Lus10030420 [exp] 293 / 5e-103 AT2G03350 259 / 1e-89 Protein of unknown function, DUF538 (.1) Lus10037126 [exp] 249 / 7e-86 AT2G03350 235 / 3e-80 Protein of unknown function, DUF538 (.1) Lus10036804 [exp] 234 / 1e-79 AT2G03350 224 / 9e-76 Protein of unknown function, DUF538 (.1) Lus10012232 [exp] 188 / 2e-61 AT3G08890 297 / 1e-104 Protein of unknown function, DUF538 (.1.2) Lus10002862 [exp] 184 / 5e-60 AT3G08890 299 / 2e-105 Protein of unknown function, DUF538 (.1.2) Lus10022674 [exp] 162 / 9e-51 AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2) Lus10012498 [exp] 138 / 3e-42 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10007617 [exp] 49 / 1e-07 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10006749 [exp] 48 / 4e-07 AT1G61667 171 / 2e-55 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.010G162400.1 pacid=42797584 polypeptide=Potri.010G162400.1.p locus=Potri.010G162400 ID=Potri.010G162400.1.v4.1 annot-version=v4.1 ATGGAGAGAGCATTAACAAAAGTGAATAGCTTGAAAGTTGGGAGCTTATGGATCTCAAAGAAAGCAAAAGAAGAGTTCTCTAACATTACTGAAGACCTCA ATACTTTCTCAACTACTGTTGAAGAGAAGGCAAAATGGGTTTTTAACAAGCTGAAAGGAAAACCACTAAAAAGCTTGCCTGATCTCCTCCGAGAATACAA CTTGCCACCAGGTCTCTTCCCCCGGAATATAACCTGTTATGAATTCGATGAAACAAAGGCCAAGCTGATTGTGTATTTGCCTTCTGTATGTGAGATCAGC TTCAATGACTCTTCTGTAATTAGGTATGCAACTCGAGTAAAGGCAATACTTGTGAGGGGAAAGCTCACGGTTATAGAGGGGATGAAGACAAAGGTGCTAG TATGGGTTAAGGTTACAAGCGTGGCAGTGGAGGGCTTCAAGTCTGATAAGGTGTGGTTTACAGCTGGTGTCAAGAAGTCTAGGCCTAAAATTGCATATGA TGTGCCACAGACTGCTATCAGGGTAGAGGAATTTTGA
AA sequence Show only first row Show all	>Potri.010G162400.1 pacid=42797584 polypeptide=Potri.010G162400.1.p locus=Potri.010G162400 ID=Potri.010G162400.1.v4.1 annot-version=v4.1 MERALTKVNSLKVGSLWISKKAKEEFSNITEDLNTFSTTVEEKAKWVFNKLKGKPLKSLPDLLREYNLPPGLFPRNITCYEFDETKAKLIVYLPSVCEIS FNDSSVIRYATRVKAILVRGKLTVIEGMKTKVLVWVKVTSVAVEGFKSDKVWFTAGVKKSRPKIAYDVPQTAIRVEEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03350			Protein of unknown function, D...		Potri.010G162400 [exp]	0	1
AT1G72480			Lung seven transmembrane recep...		Potri.001G166500 [exp]	4.35	0.9089
AT5G18460			Protein of Unknown Function (D...		Potri.019G024100 [exp]	5.09	0.9040
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.013G021900 [exp]	7.21	0.9272
AT4G33870			Peroxidase superfamily protein...		Potri.001G182400 [exp]	8.24	0.9357
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.007G119900 [exp]	9.64	0.9282
AT1G58400			Disease resistance protein (CC...		Potri.012G083700 [exp]	11.66	0.9176
AT1G32310			unknown protein		Potri.001G138700 [exp]	13.19	0.8994
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Potri.010G154100 [exp]	14.31	0.9226	Pt-AGL8.2
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Potri.016G119650 [exp]	15.87	0.9069
					Potri.001G355650 [exp]	18.02	0.9044

Compare expression of checked genes

Potri.010G162400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.