Plant FIBer expression Database

Potri.010G162500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69380 510 / 0 RRG RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
AT5G13610 343 / 2e-116 Protein of unknown function (DUF155) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G092400
[exp]
691 / 0 AT1G69380 505 / 2e-180 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Potri.008G045200
[exp]
385 / 2e-132 AT5G13610 436 / 5e-152 Protein of unknown function (DUF155) (.1)
Potri.010G216300
[exp]
379 / 2e-130 AT5G13610 424 / 3e-147 Protein of unknown function (DUF155) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036803
[exp]
525 / 0 AT1G69380 479 / 4e-170 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Lus10037127
[exp]
466 / 2e-165 AT1G69380 415 / 2e-145 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Lus10001978
[exp]
367 / 2e-125 AT5G13610 457 / 4e-160 Protein of unknown function (DUF155) (.1)
Lus10030300
[exp]
361 / 6e-123 AT5G13610 454 / 4e-159 Protein of unknown function (DUF155) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02582 DUF155 Uncharacterised ACR, YagE family COG1723
Representative CDS sequence
>Potri.010G162500.1 pacid=42797828 polypeptide=Potri.010G162500.1.p locus=Potri.010G162500 ID=Potri.010G162500.1.v4.1 annot-version=v4.1
ATGGGCAGCAGGTGGAGAGCTACTGCTTCTCTTCTCCTTAACCACATAACCACAAAAGCTTTTAAATTTCTTTCACCTAATCTTCCCAGACCTATTTATC
ACTCACACCCTTTAACCCAAACTGTTTGTGGCTTCAAATTCAGGTCATTTTCTGCAATCCCTTCTCGGGTTTCGGTTTACAGTAATGAAATTGAATCTGG
GTCTCATGATTTGGCTATTAATTATGATCTGGGACCTAAAGAAGATGAAGAATCTGGAAAGATCCCTGTTAAAGCATACTTCCTTTGTACCAGTATTAAT
TTGAAGAGCATGCAAGCAGAGAATTTAAGCTATGTTGTTCCTCCAACCTCTCGCTCAACGAATTATGTTGTCCTCAAATTTTTCGATTTCTCTTCAGATA
TTAGTGCACTTGGAATAAGAGAGTATATCAGCTGCCGCTACATGGTTGTATTCCAATATGGATCTGCTGTTCTATTTAATATTGAGGATCCTGACGTTGA
AAGGTACCTGGAAATGGTAAGGAGGCATACTTCTGGATTGCTCTCCGAGATGAGGAAAGATGATTATGCCATAAAAGAGAAACCACTTCTGGATGAGGAT
ATGCAGGGAGGCCTCGATTACATTGTCCTCAAAACTTTAGACACTGATAGTATTCGCATTATTGGAAGTGTGCTTGGGCAAAGTATTGCTTTGGACTATT
TTGTTTCACAGGTTGATGGAATGGTTGAAGAGTTTGCTGGCATAAATCGTGCAATGGAAAAAACTGGTACTTTCTCAATGGATAGGAAAAAGCTCCTTCA
ACTTGTTGGGAAGGCTAATTCAAATTTAGCTGATGTGATTCTTAAAGTTGGTCTTTTTGAGAGATCTGAAATTGCTTGGAGGGATGCAAAATATGCTCAA
ATATATGAGTACCTCAGGGAGGAGTATGAAGTTACTCAACGCTTTGGAAATTTGGATTTCAAATTAAAATTTGTAGAGCACAACATTCATTTCCTTCAAG
AAGTTATCCAAAACAGACGATCTGATCTTTTGGAATGGTGCATTATATTCCTGCTGAGCATAGAGAATATTATATCAATATATGAGATAGTTCAAGGATG
A
AA sequence
>Potri.010G162500.1 pacid=42797828 polypeptide=Potri.010G162500.1.p locus=Potri.010G162500 ID=Potri.010G162500.1.v4.1 annot-version=v4.1
MGSRWRATASLLLNHITTKAFKFLSPNLPRPIYHSHPLTQTVCGFKFRSFSAIPSRVSVYSNEIESGSHDLAINYDLGPKEDEESGKIPVKAYFLCTSIN
LKSMQAENLSYVVPPTSRSTNYVVLKFFDFSSDISALGIREYISCRYMVVFQYGSAVLFNIEDPDVERYLEMVRRHTSGLLSEMRKDDYAIKEKPLLDED
MQGGLDYIVLKTLDTDSIRIIGSVLGQSIALDYFVSQVDGMVEEFAGINRAMEKTGTFSMDRKKLLQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQ
IYEYLREEYEVTQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLSIENIISIYEIVQG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69380 RRG RETARDED ROOT GROWTH, Protein ... Potri.010G162500
[exp]
0 1
AT4G13870 WRNEXO, ATWRNEX... Werner syndrome-like exonuclea... Potri.001G320201
[exp]
1.00 0.8020
AT5G15270 RNA-binding KH domain-containi... Potri.014G045000
[exp]
6.63 0.7216
AT2G18465 Chaperone DnaJ-domain superfam... Potri.001G308900
[exp]
8.00 0.6801
AT1G01760 adenosine deaminases;RNA bindi... Potri.014G081400
[exp]
8.66 0.7045
AT1G05670 Pentatricopeptide repeat (PPR-... Potri.019G075900
[exp]
11.09 0.7627
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.019G021200
[exp]
14.56 0.7485
AT1G74580 Pentatricopeptide repeat (PPR)... Potri.010G234500
[exp]
17.34 0.7308
AT1G12930 ARM repeat superfamily protein... Potri.014G141100
[exp]
20.59 0.7291
AT2G01460 P-loop containing nucleoside t... Potri.008G130200
[exp]
21.90 0.7401
AT5G38830 Cysteinyl-tRNA synthetase, cla... Potri.008G122901
[exp]
21.93 0.7158

Potri.010G162500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.