Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69390 272 / 5e-93 ARC12, ATMINE1 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092300 [exp] 426 / 9e-154 AT1G69390 270 / 2e-92 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.004G121000 [exp] 199 / 1e-64 AT1G69390 191 / 2e-61 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.017G088401 [exp] 87 / 2e-22 AT1G69390 86 / 2e-22 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026638 [exp] 306 / 2e-106 AT1G69390 247 / 4e-83 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Lus10030421 [exp] 302 / 8e-105 AT1G69390 248 / 9e-84 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Lus10036802 [exp] 298 / 5e-103 AT1G69390 253 / 3e-85 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Lus10037128 [exp] 293 / 3e-101 AT1G69390 256 / 2e-86 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03776 [poplar] [flax] MinE Septum formation topological specificity factor MinE
Representative CDS sequence Show only first row Show all	>Potri.010G162600.1 pacid=42798006 polypeptide=Potri.010G162600.1.p locus=Potri.010G162600 ID=Potri.010G162600.1.v4.1 annot-version=v4.1 ATGGCGATATCAGGAGATCTGAGGGTCTCGGCAACACTGGCCTCTTACTCTAAACACCCTCCTCGATGTTCTTTGCCTCCCTCAAATTCCAAGGTTGAGT TCCTTGGTTTCCTCAATGGAGGATGTGGCACTTCTCAAAACATGCTCAAGTGGCCTGGTGGCGTGTTTGACAGCCGTAAAATGCATGGTCACTTTAAACG ATCTGCTGGAATTGCTGAAGAATATCAACTGTCCTCAACTGCTATTAATCAAGAAGCTGAAAGGTTGCTTTTAAGTGCCATAAACATGAGCTTATTTGAG CGTTTAAACTTGGCTTGGAGGATAATATTCCCTTCACCATCACAAAGAAAGAGCTCAAATGCAAGGATTGCCAAACAGCGTTTGAAGATGATTCTCTTCT CTGACAGATGTGCAGTTAGTGATGAGGCAAAACGGAAAATTGTGAACAACATTGTGCATGCTCTATCAGAATTTGTGGAGATAGAATCACAGGATAAAGT TCAGCTGAGCGTCACAACTGATACAGATCTTGGGACTGTGTACTCTGTGACGGTGCCTGTACGGCGGGTGAAGCCAGGATATCAGGAAGAAGAGAGTGGA TCGATAACAAACATCGAGTACAAAGATACTGGAGAAAATTCTGGTTCTGTTGATGTTCGTTTTGATTTCTACCTCCCAGATGAAAGAACACGGTTCTAA
AA sequence Show only first row Show all	>Potri.010G162600.1 pacid=42798006 polypeptide=Potri.010G162600.1.p locus=Potri.010G162600 ID=Potri.010G162600.1.v4.1 annot-version=v4.1 MAISGDLRVSATLASYSKHPPRCSLPPSNSKVEFLGFLNGGCGTSQNMLKWPGGVFDSRKMHGHFKRSAGIAEEYQLSSTAINQEAERLLLSAINMSLFE RLNLAWRIIFPSPSQRKSSNARIAKQRLKMILFSDRCAVSDEAKRKIVNNIVHALSEFVEIESQDKVQLSVTTDTDLGTVYSVTVPVRRVKPGYQEEESG SITNIEYKDTGENSGSVDVRFDFYLPDERTRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.010G162600 [exp]	0	1
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Potri.015G055300 [exp]	2.00	0.8644
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.004G078000 [exp]	2.82	0.8277	Pt-RPL19.3
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.010G077300 [exp]	3.46	0.8217
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.017G037000 [exp]	6.92	0.7690	MYB174
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.006G249300 [exp]	8.48	0.7950	HTA907
AT2G30000			PHF5-like protein (.1)		Potri.001G277700 [exp]	8.77	0.7968
AT1G65032			unknown protein		Potri.005G094100 [exp]	9.48	0.7975
AT4G25180			RNA polymerase III RPC4 (.1)		Potri.003G107300 [exp]	9.74	0.8031
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.007G068400 [exp]	11.18	0.7527
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.004G089500 [exp]	12.24	0.7866

Compare expression of checked genes

Potri.010G162600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.