Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69400 350 / 1e-120 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G49910 230 / 2e-73 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT3G19590 226 / 1e-71 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G80670 115 / 2e-29 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 50 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 47 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G15550 42 / 0.0006 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092100 [exp] 555 / 0 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G295100 [exp] 225 / 3e-71 AT3G19590 593 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G089200 [exp] 219 / 3e-69 AT3G19590 602 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G048100 [exp] 100 / 1e-23 AT1G80670 583 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G180000 [exp] 99 / 3e-23 AT1G80670 590 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 47 / 1e-05 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 45 / 4e-05 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 45 / 5e-05 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 43 / 0.0002 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014343 [exp] 400 / 5e-140 AT1G69400 313 / 6e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026051 [exp] 399 / 6e-140 AT1G69400 318 / 9e-109 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023814 [exp] 219 / 1e-68 AT3G19590 610 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003954 [exp] 218 / 1e-68 AT3G19590 618 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026095 [exp] 113 / 1e-28 AT1G80670 632 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002323 [exp] 111 / 2e-27 AT1G80670 608 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 47 / 1e-05 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 47 / 1e-05 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017157 [exp] 46 / 3e-05 AT5G66240 541 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10021575 [exp] 45 / 5e-05 AT5G66240 540 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G162700.3 pacid=42799809 polypeptide=Potri.010G162700.3.p locus=Potri.010G162700 ID=Potri.010G162700.3.v4.1 annot-version=v4.1 ATGAACGGCGAGTGTTTAAATTTTGAAAACCCGATCGGAGATGCACTTTCCAGGGTCCAATTCGCCCCTCAATCCAATAATCTCCTCGTTTCTTCTTGGG ATTCCAAACTTCGATTATACGATGTGGATAGCTCTCTGCTCAGATTAGAAGCTCCTGCTCCCTCACAAGCTGCGCTTCTCGATTGTTGTTTCCAGACTGA GTCTGTGGCTTTTACAGCTGCCTCTGACGGTTCCATTATAAGGTATGACTTGCATTCAGGAACTAATGATGCCATTGGAAATCATCAGGATATAGCAGCA TGTGTGGGATACTCTATTGAAACATGTCAAGTGATTTCAGCTGGTTTGGACAAGAAGGTAATGTCTTGGGATGTCCGCTTGGCAAATCCTCTTACACTCT TCAGAAATCTAGATGCAGAAATTGAGTCCATCTCTGTCTCTGGGTTTGATTTGATGGTAGCTGTTGGAGCAGCGGTAAATATATATGACTTGCGGAACTT TGAAAGAGCAGTTGATTTAAAAGAATCATCTATGGATGTAGGGATAAGATGTGTTGCTTCAACTTCATATACCAGAGGATATGCAATTGGATCAATAGAT GGACGGGTAGCCGTAGAGATCTCAAATCCATTAAATTTAAATTCCATCAGATACACTTTTCGGTGTCACCCTAAGACAAAGGATGGAAAAGCACATCTAG TATCAGTTAATGACATAGCATTCAATCCACTCATCAGTGGTACTTTTGTCACTGGTGATAATGAAGGCTATGTTACTGCATGGGATGCTCAAAGTAAAAG AAAATTACATGAGTTTCCTAGATATCCAAACAGTGTGGCATCCTTATCATACAACCATGTGGGGCAACTTTTGGCTGTTGCATCAAGCTACACATACCAA GAAGCTAATGAAACGGAGGTGCCCCCTCAAATATTTATTCAGAAAATGGATGGCAGCGACATTGGATATTCTCCTGAAGTTTCAAGAGATTCAAGTAGGA AATGA
AA sequence Show only first row Show all	>Potri.010G162700.3 pacid=42799809 polypeptide=Potri.010G162700.3.p locus=Potri.010G162700 ID=Potri.010G162700.3.v4.1 annot-version=v4.1 MNGECLNFENPIGDALSRVQFAPQSNNLLVSSWDSKLRLYDVDSSLLRLEAPAPSQAALLDCCFQTESVAFTAASDGSIIRYDLHSGTNDAIGNHQDIAA CVGYSIETCQVISAGLDKKVMSWDVRLANPLTLFRNLDAEIESISVSGFDLMVAVGAAVNIYDLRNFERAVDLKESSMDVGIRCVASTSYTRGYAIGSID GRVAVEISNPLNLNSIRYTFRCHPKTKDGKAHLVSVNDIAFNPLISGTFVTGDNEGYVTAWDAQSKRKLHEFPRYPNSVASLSYNHVGQLLAVASSYTYQ EANETEVPPQIFIQKMDGSDIGYSPEVSRDSSRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69400			Transducin/WD40 repeat-like su...		Potri.010G162700 [exp]	0	1
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.012G032100 [exp]	2.00	0.8078
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.018G145514 [exp]	20.78	0.7482
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	21.26	0.7788
AT1G49960			Xanthine/uracil permease famil...		Potri.001G292600 [exp]	33.40	0.7733
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.017G130000 [exp]	35.94	0.7308
AT2G24400			SAUR-like auxin-responsive pro...		Potri.010G253800 [exp]	38.47	0.7303
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	47.23	0.7430
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.008G060700 [exp]	48.74	0.7367
AT2G26490			Transducin/WD40 repeat-like su...		Potri.002G130400 [exp]	50.00	0.7213
AT2G40316			unknown protein		Potri.008G073200 [exp]	52.99	0.7506

Compare expression of checked genes

Potri.010G162700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.