Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26640 516 / 0 Amino acid kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026636 [exp] 471 / 2e-168 AT1G26640 434 / 8e-154 Amino acid kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [poplar] [flax] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Potri.010G162900.1 pacid=42799235 polypeptide=Potri.010G162900.1.p locus=Potri.010G162900 ID=Potri.010G162900.1.v4.1 annot-version=v4.1 ATGGAGGACACAACAACCCTCAGTGTAACCAAACCAATCCGTTGCATTGTTAAACTTGGAGGCGCGGCAATTACTTGCAAGAATGATTTAGAGAAGATAA ATGAAGAAAATGTTGAGATTGTTTCCTCACAGCTGAGGGAAGCCATGATTACTGGGTCTAGCTCACGAAAGGTTCTTGGGATGGATTGGAGCAAGAGACC TGGAAAATCAGGAATTTCTTGTGATGCTGACGATTTTGAGGACCAAAACTTGGATTCTAGCAGTTTTGTTGTTGTTCATGGAGCAGGTTCCTTTGGGCAC TTTCAGGCAAGCAAATCAGGGGTTCATAAAGGAGGATTGAACAAACCACTTGTCAAGGCTGGTTTTGTTGCCACACGCATTTCCGTTACGACTCTTAATC TCGAAATTGTTCGAGCATTGGCCAGAGAGGGCATTCCTACCATTGGAATGTCTCCATTTTCATGTGGATGGACAACTCCTGAAAGAAATATGGCATCTGC TGATTTATCAATGGTAGCTCAGGCAATCAACTCCGGATTCGTACCTGTCTTACATGGAGATGCTGTACTTGATGATTTGCAGGGATGCACCATATTGAGT GGTGATGTTATTATACGTCATCTTGCAGCCTATTTGAAACCTGAATACGTTGTTTTCCTGACAGATGTTTTGGGTGTTTATGATCGTCCTCCTTCAGAAC CTAATGCAGTCCTCTTGAGGGAGATCGCTGTGAGTGAAGATGGGAGCTGGTCTGTTGTGAAACCAACACTTGAGGACATGAAAAAGCAAGTTGAAACAAC TGTTGCAGCCCATGATACGACTGGTGGAATGGCGACCAAGATATCAGAAGCTGCATTGATTGCAAAACTTGGAATTGATGTCTACATTGTGAAGGCAGCA ACAACCCATTCTTCGAGGGCTTTAAGTGGAGAGGTGAGAGGCGCTCTTCCTGAAGATTGGCTTGGGACCGTCATTCGGTTTGTTGGTAAAGGAAATAGCA ACTGCTGA
AA sequence Show only first row Show all	>Potri.010G162900.1 pacid=42799235 polypeptide=Potri.010G162900.1.p locus=Potri.010G162900 ID=Potri.010G162900.1.v4.1 annot-version=v4.1 MEDTTTLSVTKPIRCIVKLGGAAITCKNDLEKINEENVEIVSSQLREAMITGSSSRKVLGMDWSKRPGKSGISCDADDFEDQNLDSSSFVVVHGAGSFGH FQASKSGVHKGGLNKPLVKAGFVATRISVTTLNLEIVRALAREGIPTIGMSPFSCGWTTPERNMASADLSMVAQAINSGFVPVLHGDAVLDDLQGCTILS GDVIIRHLAAYLKPEYVVFLTDVLGVYDRPPSEPNAVLLREIAVSEDGSWSVVKPTLEDMKKQVETTVAAHDTTGGMATKISEAALIAKLGIDVYIVKAA TTHSSRALSGEVRGALPEDWLGTVIRFVGKGNSNC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26640			Amino acid kinase family prote...		Potri.010G162900 [exp]	0	1
AT1G61670			Lung seven transmembrane recep...		Potri.006G109000 [exp]	14.45	0.7502
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.013G088400 [exp]	17.91	0.7422
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.001G465500 [exp]	22.60	0.7214	HEN902,HEN1.2
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Potri.001G146900 [exp]	23.62	0.7309	Pt-DRT101.2
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.014G106200 [exp]	25.92	0.7199	Pt-MTP1.1
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.017G026300 [exp]	32.00	0.6570
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G081100 [exp]	41.56	0.7159
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.008G165000 [exp]	43.47	0.7153
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.018G132500 [exp]	46.86	0.6752
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Potri.005G054800 [exp]	49.65	0.6910

Compare expression of checked genes

Potri.010G162900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.