Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13970 543 / 0 Protein of unknown function (DUF1336) (.1) AT3G29180 496 / 1e-172 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 476 / 1e-164 Protein of unknown function (DUF1336) (.1) AT1G59650 332 / 2e-108 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 320 / 6e-104 Protein of unknown function (DUF1336) (.1) AT5G25010 63 / 9e-11 Protein of unknown function (DUF1336) (.1) AT4G19040 60 / 4e-09 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G35180 59 / 4e-09 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G10750 57 / 7e-09 Protein of unknown function (DUF1336) (.1) AT5G24990 53 / 1e-07 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G088000 [exp] 569 / 0 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.008G190500 [exp] 342 / 9e-112 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.010G040100 [exp] 331 / 1e-107 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G074800 [exp] 326 / 2e-106 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.008G213000 [exp] 64 / 1e-10 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G113100 [exp] 62 / 4e-10 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.018G014234 [exp] 59 / 4e-09 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.008G038800 [exp] 57 / 3e-08 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 50 / 2e-06 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026633 [exp] 554 / 0 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 548 / 0 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 536 / 0 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10036683 [exp] 319 / 3e-103 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 319 / 5e-103 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10010740 [exp] 317 / 9e-103 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 315 / 2e-101 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10000174 [exp] 230 / 8e-74 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 206 / 3e-62 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10019591 [exp] 73 / 3e-13 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.010G163100.1 pacid=42798701 polypeptide=Potri.010G163100.1.p locus=Potri.010G163100 ID=Potri.010G163100.1.v4.1 annot-version=v4.1 ATGGGTGGCTGTGTCTCAACAAACAATGAAAGAATAAGAACAACTAGGAAACACATGCGTAAATCTTCCAAAAGTAGTGGAAAGAGTTCCACTTGTATTG CTGATTCCCCTATTCAACGGCTTAGTGATGCTGGAATTAGTGATTTTGCTCTTAGAGAGTTTGTTCATCTTGACTTTGAGAAGGGTGCTGCAACTACCTG CAAGAGATCTGAAGTTTCTAATAAGACATTCCATCTCACCCAGCTACAATGGAACCATAGTCAAATTGATGCAAATGGAATATGTCAGGAGGAAGTATGG TTTGACTCTCTTAGTATTATAGATTCAGATTCGGATGATGACTTCATCAGTGTGCATGGAGATTGTTTTCCTCCTGTTGGTAATGCAACTGGACATAAAC AAAACACTCAAATGCTTCAATATGGAGCTGCATCATGCTTTGTAGATGCTGGGTGCAAGTATGAGGGCTTCTATGAAAGCTACCTGAAAATGGATGGAGG AGGTCCAAAGGGCGATGAGGTTTCTAGTAAGATAAAGAAAGCTTTAGATGATCCTTGTGGAAATTTTAAAGGTCTCAAAGAGGGCATGCATGACTTGGCA GAGAAAACTCAAGAATGTAGAAGGAAATCAAAAGTAATTATGCTATCATTAAAGAGGAAATCTTGCGATGGAGAGGAAACAACAGAATTCTCCGAGAGAT TACTGTATCGCCCAAGAGCAGGATTTCTGATTCCACGTTCAAAAGGAGAGAAGCCAACTGCTGGATGCTGGTCTGAGATTTCACCTTCAGTTTTTAAGCT CCGAGGCGAGACTTTTTTCAGAGATAAGCAGAAGTGCCCTGCTCCGGACTACAGTCCATATGTACCAATTGGCGTAGATTTATTTGTATGCCCACGGAAG ATAAATCACATTGCTCAGCATCTTGAACTTCCTAATTTGCAAGCGCATGAGAAAGTACCGCCGCTGCTGATCATTAATATGCAGCTTCCCACTTATCCTG TTTCAATGTTCAATTGTGATTCGGATGGAGAAGGCATGAGCCTTGTAGTATATTTTAAACTATCTGAGAATTTCAACAAACAGATTTCACCTTGTTTTCA AGACAGCATCAAGAGACTTGTTGAGGATGATATGGAAAAGGTTAAAGGCTTTGCAAAAGAGTGCACAGTTCCTTTCAGAGAGAGGCTGAAAATTCTGGTG GGGCTAGTTAATCCAGAGGAATTGCAGTTGAGTTCTGCAGAAAGGAAGCTTATTCATAGTTATAATGACAAGCCAGTGCTTTCACGCCCTCAACATGAAT TCTTTAAGGGACCTAATTACTTTGAGATTGACCTGGATATACATCGGTTCAGTTACATATCTAGGAAAGGACTTGAAGCATTCAGAGATCGCTTGAAGCA TGGGATAGCTAATGTGGGTCTGACTATTCAGGCACAAAAACAAGAGGAACTGCCAGAGCAAATGCTGTGCTGTGTGCGCTTGAACAAGATAGATTTGGTA AATCATGGCCAAATACCAACTGTTGTTACTCGGGATGATTAA
AA sequence Show only first row Show all	>Potri.010G163100.1 pacid=42798701 polypeptide=Potri.010G163100.1.p locus=Potri.010G163100 ID=Potri.010G163100.1.v4.1 annot-version=v4.1 MGGCVSTNNERIRTTRKHMRKSSKSSGKSSTCIADSPIQRLSDAGISDFALREFVHLDFEKGAATTCKRSEVSNKTFHLTQLQWNHSQIDANGICQEEVW FDSLSIIDSDSDDDFISVHGDCFPPVGNATGHKQNTQMLQYGAASCFVDAGCKYEGFYESYLKMDGGGPKGDEVSSKIKKALDDPCGNFKGLKEGMHDLA EKTQECRRKSKVIMLSLKRKSCDGEETTEFSERLLYRPRAGFLIPRSKGEKPTAGCWSEISPSVFKLRGETFFRDKQKCPAPDYSPYVPIGVDLFVCPRK INHIAQHLELPNLQAHEKVPPLLIINMQLPTYPVSMFNCDSDGEGMSLVVYFKLSENFNKQISPCFQDSIKRLVEDDMEKVKGFAKECTVPFRERLKILV GLVNPEELQLSSAERKLIHSYNDKPVLSRPQHEFFKGPNYFEIDLDIHRFSYISRKGLEAFRDRLKHGIANVGLTIQAQKQEELPEQMLCCVRLNKIDLV NHGQIPTVVTRDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13970			Protein of unknown function (D...		Potri.010G163100 [exp]	0	1
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	2.00	0.8769
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136501 [exp]	5.65	0.8363
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019300 [exp]	5.91	0.8351
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.007G033900 [exp]	6.92	0.8131
AT5G02070			Protein kinase family protein ...		Potri.008G059900 [exp]	7.34	0.8737
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.014G043100 [exp]	10.95	0.8117
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.006G023600 [exp]	11.74	0.8251
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Potri.002G129700 [exp]	12.84	0.8145	KO,GA3.1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G155600 [exp]	17.46	0.7817	CYP716C1
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G128100 [exp]	20.19	0.8170	2OGox5

Compare expression of checked genes

Potri.010G163100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.