Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69420 565 / 0 DHHC-type zinc finger family protein (.1.2) AT4G15080 243 / 6e-71 DHHC-type zinc finger family protein (.1) AT3G22180 224 / 4e-64 DHHC-type zinc finger family protein (.1) AT2G33640 220 / 1e-63 DHHC-type zinc finger family protein (.1) AT4G01730 129 / 9e-32 DHHC-type zinc finger family protein (.1) AT5G04270 65 / 2e-11 DHHC-type zinc finger family protein (.1) AT3G48760 65 / 8e-11 DHHC-type zinc finger family protein (.1) AT3G26935 63 / 3e-10 DHHC-type zinc finger family protein (.1) AT3G04970 62 / 3e-10 DHHC-type zinc finger family protein (.1.2) AT5G41060 62 / 4e-10 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091700 [exp] 904 / 0 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.002G006900 [exp] 258 / 4e-77 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 234 / 1e-67 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 230 / 5e-66 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 195 / 2e-57 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.014G112000 [exp] 134 / 2e-33 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 132 / 7e-33 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 66 / 5e-11 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 65 / 7e-11 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036798 [exp] 717 / 0 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10037133 [exp] 575 / 0 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 489 / 4e-168 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10026632 [exp] 478 / 1e-163 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10016036 [exp] 233 / 5e-68 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 235 / 8e-68 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 228 / 4e-65 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 172 / 2e-46 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10038029 [exp] 153 / 8e-40 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 94 / 3e-20 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G163200.1 pacid=42798444 polypeptide=Potri.010G163200.1.p locus=Potri.010G163200 ID=Potri.010G163200.1.v4.1 annot-version=v4.1 ATGAGAAAGCATGGATGGCAACTTCCATATCACCCTCTTCAGGTGGTGGCTGTTGCTGTATTTCTGGCTTTGGGGTTTGCTTTTTATGTGTTCTTTGCTC CTTTTGTTGGGAAGAAGTTGTTCCAACATATAGCGATGGGAATCTACACTCCTCTGATTACTTGTGCCTTTGGCCTATATATTTGGTGTGCAGCTGCTGA TCCAGCAGACCCTGGAGTTTTTAGATCTAAAAAGTATCTCAAGATTCCAGACAGTGAAAAGCATAACCCACAGAAGGACTCAAAACTTGGTGGAGGGTCA ACTTCATCGAAACATGATGCAAATGCTTCTACTGTTGGAGGAAAATCTCTGGATAAAGAGGCGGTGGGTTCTGACGCAACTTTGAAGGAGCCAAATACTC AAATTGAGAAGGTGTCATCAGGGAATTCATCTTGTTTTCAGTGGGTTTTCTTTCCTTGTGCTTTGATCTGTAATTGGTGCAGTTCGAGTGATGAATCTTC TGAGCTACAGATGAGTGAAGATGGCATGTTCTACTGCAGTTTGTGTGAAGTTGAGGTTTTCAAGTACAGCAAGCACTGTAGAGTGTGTGACAAATGTGTT GATCGTTTTGATCATCACTGCAGGTGGCTTAACAACTGTGTAGGCAAGAAGAACTACGGACAGTTTTTCACCCTTATGGTTTCTTCTCTCCTCCTGCTTA TTCTACAATGGTCGACTGGAATCCTTGTACTTATCTGCTGTTTTCTTGAACGGAAGCGATTCGCTGTGGACATCTCTGCCAAGCTGGGAAGCAGTTTCTC TTTGGCCCCCTTTGTTATCGTGGTGTCAGTGTGTACCATTTTGGCAATGATTGCCACCTTACCTCTTGCCCAGCTTTTCTTCTTTCATATCCTCCTTGTA AAAAAGGGAATCAGCACTTATGATTACATAATAGCTCTAAGGGAGCAGGAACAAGAGCAACAGGGCGTTGAAGGTCAGCAGAGTGTTCAAATGTCTCCTG CCAGCTCACTCACTGGATTAAGCAGTGCAAGCTCATTTTCTACTTTTCACCGGGGTGCTTGGTGCACACCACCTCGTCTTTTTCTGGAAGATCAGTTTGA TGTTGTTCCTCCAGAGACTGGATCTGTTAGCTCATTAGGAAAAAAGTCTATGAGGGAAGAACCAATCAAGAAAAAGAACCCCGCTACAGTAAAGATCAGT CCTTGGACATTGGCCAGATTAAACGCCGAAGAAGTTTCGAGAGCTGCAGCAGAGGCGAGGAAAAAATCCAAAATCCTGCAGCCTGTGACAAGACGGGAAC CCCCTTTTGGGCTAGACACAGATAGCAGCTTTGGCAGCAGTGGCCATCGGATGGTCCCAAGGATTGACAATAATAGAAGGAGAGCTAGTAAGCGAATACG CTTTCCAGCTGACCTACCCATGGAGTCTGTAACTAGGACTTCAGGTATCACTCCTGAGAAAGGTTTCACTGAGACATCTACAAGCTTGGCTCCTCTTCAG CGTGAGGCCCGTAGTGCTTTCCAGACCAGCCGAGCAATGTCAAGCTCAGCTGGGGTTGCTGCTTCTTCTCCTGAAAGCAGTTTAGACTCCCCAGATATCC ATCCTTTCCGGGTTTCCTCATCCGGAGCTGAAGAGTCCAGACGTCTCACAGGTCTATCTGTAGCTGGTGCTGTTTCTCACAATGCATTCCCACTTTCAAG GTCTACTAGTGATGGGTATGAAGCTTCTGGTGGAGAAGATAGTGACAGGGTTCCTTCCAGGATTGCTCAAAGGTCAGATAACTGGAGTAACCTTCTCTTC CATGCTGATCGGGACGAGACTGTATTTAGAATGAAAGCATCATCTTCATCCAGCCAGGCTAACAATAGAGAACTTTGA
AA sequence Show only first row Show all	>Potri.010G163200.1 pacid=42798444 polypeptide=Potri.010G163200.1.p locus=Potri.010G163200 ID=Potri.010G163200.1.v4.1 annot-version=v4.1 MRKHGWQLPYHPLQVVAVAVFLALGFAFYVFFAPFVGKKLFQHIAMGIYTPLITCAFGLYIWCAAADPADPGVFRSKKYLKIPDSEKHNPQKDSKLGGGS TSSKHDANASTVGGKSLDKEAVGSDATLKEPNTQIEKVSSGNSSCFQWVFFPCALICNWCSSSDESSELQMSEDGMFYCSLCEVEVFKYSKHCRVCDKCV DRFDHHCRWLNNCVGKKNYGQFFTLMVSSLLLLILQWSTGILVLICCFLERKRFAVDISAKLGSSFSLAPFVIVVSVCTILAMIATLPLAQLFFFHILLV KKGISTYDYIIALREQEQEQQGVEGQQSVQMSPASSLTGLSSASSFSTFHRGAWCTPPRLFLEDQFDVVPPETGSVSSLGKKSMREEPIKKKNPATVKIS PWTLARLNAEEVSRAAAEARKKSKILQPVTRREPPFGLDTDSSFGSSGHRMVPRIDNNRRRASKRIRFPADLPMESVTRTSGITPEKGFTETSTSLAPLQ REARSAFQTSRAMSSSAGVAASSPESSLDSPDIHPFRVSSSGAEESRRLTGLSVAGAVSHNAFPLSRSTSDGYEASGGEDSDRVPSRIAQRSDNWSNLLF HADRDETVFRMKASSSSSQANNREL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	0	1
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	1.73	0.8445
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	2.44	0.7888
AT5G26010			Protein phosphatase 2C family ...		Potri.006G232700 [exp]	5.65	0.7532
AT4G24015			RING/U-box superfamily protein...		Potri.003G142600 [exp]	5.91	0.7780
AT3G54800			Pleckstrin homology (PH) and l...		Potri.008G038800 [exp]	6.32	0.7698
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.001G205500 [exp]	6.48	0.7745	KUP7.1
AT4G10550			Subtilase family protein (.1.2...		Potri.011G146300 [exp]	6.92	0.7842
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	8.24	0.7834	CLE12.1
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	10.09	0.7769
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.004G047800 [exp]	10.19	0.7627

Compare expression of checked genes

Potri.010G163200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.