Plant FIBer expression Database

Potri.010G163501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G163501.1 pacid=42800020 polypeptide=Potri.010G163501.1.p locus=Potri.010G163501 ID=Potri.010G163501.1.v4.1 annot-version=v4.1
ATGCTCATAACTCTGTCTGGTGTCATCACTCCCGCTGAAATTGAGGGCAACCTTCTTTCTTCTGTTTTTTTCTTCGCCGCTCTGTTTTCGTTTACAAAAA
GGGAGTATGCTAATCAATTTTTTTATGTTGCTGCGGAGATGCCATTTTGCTGTTTTCCATTCTGCTGCGGAAAGAAAAGCAAATCAAGACATCAGAAAAC
TGTTCATCCAATTTACTCGACCCATCCGGTGGATCCTGGAACGAAGAACACGCATGTTGAGAGGGGATATGGAGTCGAAGGAGGTCAAATACCAGAGCCA
ATAATCCCTCCCCTCCAAGTAAACTCCCAAGCAGATAAAAACATTGGATGCAGCAACTAA
AA sequence
>Potri.010G163501.1 pacid=42800020 polypeptide=Potri.010G163501.1.p locus=Potri.010G163501 ID=Potri.010G163501.1.v4.1 annot-version=v4.1
MLITLSGVITPAEIEGNLLSSVFFFAALFSFTKREYANQFFYVAAEMPFCCFPFCCGKKSKSRHQKTVHPIYSTHPVDPGTKNTHVERGYGVEGGQIPEP
IIPPLQVNSQADKNIGCSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G163501
[exp]
0 1
AT2G27940 RING/U-box superfamily protein... Potri.001G212101
[exp]
4.12 0.8587
AT4G34310 alpha/beta-Hydrolases superfam... Potri.014G034100
[exp]
7.34 0.8346
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Potri.003G110100
[exp]
10.58 0.8310
Potri.014G175100
[exp]
11.87 0.7846
Potri.012G116551
[exp]
12.48 0.8382
AT4G04790 Tetratricopeptide repeat (TPR)... Potri.011G133100
[exp]
14.14 0.8368
AT5G22750 RAD5A, RAD5 DNA/RNA helicase protein (.1) Potri.004G189400
[exp]
18.00 0.8206
AT5G58040 FIP1[V], ATFIP1... homolog of yeast FIP1 [V], hom... Potri.006G187400
[exp]
18.70 0.8208
AT2G36240 pentatricopeptide (PPR) repeat... Potri.006G068700
[exp]
19.07 0.8200
AT1G04840 Tetratricopeptide repeat (TPR)... Potri.001G316500
[exp]
23.23 0.8426

Potri.010G163501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.