Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69440 1305 / 0 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G48410 622 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 601 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 588 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G31290 541 / 3e-174 AGO3 ARGONAUTE 3 (.1) AT1G31280 535 / 8e-174 AGO2 argonaute 2, Argonaute family protein (.1) AT5G21150 405 / 6e-126 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 383 / 3e-117 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 334 / 1e-99 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21030 315 / 4e-93 PAZ domain-containing protein / piwi domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037100 [exp] 632 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.006G118600 [exp] 629 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.015G029000 [exp] 625 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.010G081300 [exp] 617 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 610 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.001G213700 [exp] 603 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.009G001500 [exp] 596 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.012G118700 [exp] 578 / 0 AT1G31280 910 / 0.0 argonaute 2, Argonaute family protein (.1) Potri.006G025900 [exp] 395 / 1e-121 AT2G27040 1236 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037136 [exp] 1423 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 1422 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036794 [exp] 1422 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10031331 [exp] 620 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 619 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 617 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 610 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10006627 [exp] 607 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10040619 [exp] 599 / 0 AT1G31280 923 / 0.0 argonaute 2, Argonaute family protein (.1) Lus10018290 [exp] 588 / 0 AT1G31280 907 / 0.0 argonaute 2, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain CL0219 [poplar] [flax] RNase_H PF02171 [poplar] [flax] Piwi Piwi domain CL0219 [poplar] [flax] PF08699 [poplar] [flax] ArgoL1 Argonaute linker 1 domain CL0219 [poplar] [flax] PF16486 [poplar] [flax] ArgoN N-terminal domain of argonaute
Representative CDS sequence Show only first row Show all	>Potri.010G163800.1 pacid=42798430 polypeptide=Potri.010G163800.1.p locus=Potri.010G163800 ID=Potri.010G163800.1.v4.1 annot-version=v4.1 ATGGAAGAGACAGAAGAGTCCAGTGGTAACAAGAAATGCACCACCAAGACCAGGACTTTCAGAGGAAGGACCAACACTCACAAGCATCATTATCACCAGT ATCAGTATCAGTATCAATATCACTATCACTATCAGCACCAACTCTTGCAATACTCAAATCAATATGGTTTCTTTAACCATAACCAGTACCCGGGTTACTA CCCAGCTCTTCTTCCTTTACCTCCACCAATACCTCTCCAACTTGCTCTAACACCGCCTCTCCCTCAAAACCATAGCTTTATATCGAAAACCCAGTTGCAG AAACCTTTATGCAAGCTAAATAACCCCCCTCCCCCTCCTCCTTCCCCCGCTCCTCCTACCTCCTCTGATACCAAAGGCCCAGCTGTTACAACTTCACCAG CTTTTGAGGGGCTTCAACAACAGAAGAATCGGCCTCTTAAAGGAGATGGTGGAAGGAAAGTCATGAGTGCCACCACACAATCACTAGTGGTTGCAAGGAG ACCAGATTCTGGTGGTGTAGAAGGATCAGTTATTACTCTCCTTGCCAACCATTTCCCTGTTCAATTCGACTCCTCGCAACGAATTTTCCATTACAATGTG GAAATTTCTCCTAATCCTTCCAGGGAGGTTGCCCGGATGATCAAGCAAAAACTGGTGAAGGAAAATTCAGCTGTGCTCTCTGGTGCTCTTCCAGCCTACG ATGGCCGAAAAAGTCTTTACAGTCCTGTTGAATTCCAAAAGGATAGGCTTGAGTTCTATGTTAGCCTCCCAATCCCAACTACTAAGTCATCACTGCCTTT TGGAGAATTCAATTTCTTGCAAGAGAAGCATCAACAGCTCAAACTATTTCGAATAAATATCAAGCTTGTTTCGAAGTTGGATGGCAAGGAATTGAGTCGC TACTTGAGCAAGGAAGGCGATGATTGGATCCCTCTGCCTCAGGATTATCTGCATGCTTTGGATGTTGTTTTGAGAGAGAGTCCAATGGAGAGATGTCTAC CTGTGGGAAGATCACTGTATTCTAGTTCAATGGGAGGAACTAAAGAAATTGGAGGTGGAGCGGTTGCATTAAGAGGGTTCTTTCAAAGTCTAAGGCCAAC TCAACAAGGGCTAGCTCTCAATGTGGATTTCTCTGTGACTGCTTTTCATGAAAGTATTGGAGTAATTCCCTACCTGCAAAAGCGTCTAGAATTTCTTCGG GACCTTCCTCAAAGGAAAAAAAGAAGTTTGGTTGGTGAAGAAAGGAAAGAAGTGGAGAAGGCCTTAAAGAACATCAGGATCTTTGTTTGTCACAGGGAAA CTGTTCAGAGATACCGGGTGTTTGGCCTAACTGAGGAAGCTACAGAAAATCTTTGGTTTTCTGACAGGGATGGAAAAAATCTGAGGTTGCTGAATTACTT CAAGGATCACTACAACTACGATATACAATTCAGAAACTTACCATGCTTGCAGATTAGTAGGAGCAAACCATGTTATCTTCCTATGGAACTCTGTATGATT TGTGAAGGCCAGAAGTTTCTCGGGAAGCTATCTGATGATCAGACTGCAAGGATACTTAAGATGGGCTGCCAAAGACCAAAAGAACGAAAAGCCATCATAG ATGGAGTCATGCGAGGATCTGTTGGCCCAACAAGTGGCAGCCAGGGAAGAGAATTCAAACTCCATATTTCAAGAGAAATGACACGATTGAGCGGCAGAAT TCTTCAACCTCCAAAACTGAGACTTGGTGATGGTGGCCATGTAAGAGATCTCATTCCTTCTCGCCATGATTGCCAGTGGAACCTGCTGGATAGCCATGTC TTTGAAGGAACTAGAATCCAAAGGTGGGCGCTGATAAGTTTTGGGGGCACCCTTGATCAGAAGTCCAGCATTCCAAAATTCATAAACCAGCTATCTCAAA GGTGTGAACAATTAGGCATCTTCCTTAACAAGAACACAATGATTAAACCTCAATATGAGCCAACTCAGGTGCTAAATAACGTCTCCCTTCTGGAATCAAA ACTCAAGAAGATCCACAGCGCCGCATCAAACAATCTCCAGCTGCTTATATGCGTAATGGAGAAGAAACACAAAGGGTACGCAGATTTGAAGCGAATAGCA GAGACAAGTGTTGGTGTCGTAACCCAATGCTGCTTGTATTTAAATCTTGGCAAGTTGAGCTCACAATTTCTGGCTAATTTGGCTCTCAAGATCAATGCCA AAGTTGGTGGGTGCACAGTTGCTTTGTACAATTCGTTACCCTCTCAGATTCCTCGCCTCCTTCGTTCCAATGAACCTGTGATCTTCATGGGAGCTGATGT GACTCATCCTCACCCGCTCGACGATATCAGTCCATCTGTTGCTGCTGTGGTTGGTAGCATGAACTGGCCTGCAGCAAACAAGTATGTCTCAAGAATGAGG TCGCAAACACATCGACAAGAAATCATCCAAGACCTTGGTGAAATGGTGAAAGAATTACTAGACGACTTTTACCAAGAATTGAATGAACTTCCCAAAAGAA TTATATTCTTTAGGGACGGGGTAAGCGAAACCCAATTTTATAAGGTCCTTAAAGAGGAGTTGCAAGCCATTAGAGAAGCTTGTTCTAGATTCCCTGGTTA TAGACCTCCCATTACTTTTGCAGTAGTCCAGAAGAGACATCACACAAGGTTGTTTCCGAATGAAACTGATCCATCTTCAACTCAGAACCAGTTTTCTGAC GAAAATATACCCCCTGGGACTGTCGTGGACACTGTGATTACACATCCAAGGGAATTTGATTTCTATCTATGCAGCCATTGGGGAGTGAAAGGTACAAGCA GGCCAACACATTACCATGTCCTGTGGGATGAGAACCAATTCACTTCTGATGAACTACAGAAGTTGGTTTACAATCTGTGCTACACATTTGTAAGGTGCAC CAAGCCAGTTTCTTTAGTGCCTCCAGCTTACTATGCTCACTTGGCTGCATATAGAGGCAGACTTTACCTTGAGCGATCAGAGTGCATGGCTTCCATAAGA AATGCTTCTACAATCTCAAGAGCAGCCCCACCAAAGGCAGCTCCTCTACCAAAGCTCAGTGAAAATTTAAAGAAGCTAATGTTCTACTGCTGA
AA sequence Show only first row Show all	>Potri.010G163800.1 pacid=42798430 polypeptide=Potri.010G163800.1.p locus=Potri.010G163800 ID=Potri.010G163800.1.v4.1 annot-version=v4.1 MEETEESSGNKKCTTKTRTFRGRTNTHKHHYHQYQYQYQYHYHYQHQLLQYSNQYGFFNHNQYPGYYPALLPLPPPIPLQLALTPPLPQNHSFISKTQLQ KPLCKLNNPPPPPPSPAPPTSSDTKGPAVTTSPAFEGLQQQKNRPLKGDGGRKVMSATTQSLVVARRPDSGGVEGSVITLLANHFPVQFDSSQRIFHYNV EISPNPSREVARMIKQKLVKENSAVLSGALPAYDGRKSLYSPVEFQKDRLEFYVSLPIPTTKSSLPFGEFNFLQEKHQQLKLFRINIKLVSKLDGKELSR YLSKEGDDWIPLPQDYLHALDVVLRESPMERCLPVGRSLYSSSMGGTKEIGGGAVALRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLR DLPQRKKRSLVGEERKEVEKALKNIRIFVCHRETVQRYRVFGLTEEATENLWFSDRDGKNLRLLNYFKDHYNYDIQFRNLPCLQISRSKPCYLPMELCMI CEGQKFLGKLSDDQTARILKMGCQRPKERKAIIDGVMRGSVGPTSGSQGREFKLHISREMTRLSGRILQPPKLRLGDGGHVRDLIPSRHDCQWNLLDSHV FEGTRIQRWALISFGGTLDQKSSIPKFINQLSQRCEQLGIFLNKNTMIKPQYEPTQVLNNVSLLESKLKKIHSAASNNLQLLICVMEKKHKGYADLKRIA ETSVGVVTQCCLYLNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLLRSNEPVIFMGADVTHPHPLDDISPSVAAVVGSMNWPAANKYVSRMR SQTHRQEIIQDLGEMVKELLDDFYQELNELPKRIIFFRDGVSETQFYKVLKEELQAIREACSRFPGYRPPITFAVVQKRHHTRLFPNETDPSSTQNQFSD ENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSECMASIR NASTISRAAPPKAAPLPKLSENLKKLMFYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Potri.010G163800 [exp]	0	1
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.010G223766 [exp]	2.23	0.7837
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.013G042600 [exp]	18.11	0.7487	Pt-WRKY39.2
AT5G49560			Putative methyltransferase fam...		Potri.007G025600 [exp]	18.81	0.7254
AT5G57970			DNA glycosylase superfamily pr...		Potri.003G182300 [exp]	19.79	0.6734
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Potri.007G036100 [exp]	28.72	0.6346
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	30.26	0.7175	SDG906,SUVH3.3
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	33.13	0.7033
AT2G38600			HAD superfamily, subfamily III...		Potri.016G139700 [exp]	35.32	0.6754
AT2G23790			Protein of unknown function (D...		Potri.002G133400 [exp]	35.91	0.7013
					Potri.016G139750 [exp]	36.83	0.6420

Compare expression of checked genes

Potri.010G163800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.