Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69450 844 / 0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G01100 811 / 0 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G58520 538 / 0 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 509 / 3e-171 Early-responsive to dehydration stress protein (ERD4) (.1) AT1G11960 397 / 9e-128 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 389 / 8e-125 ERD (early-responsive to dehydration stress) family protein AT3G21620 388 / 2e-124 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 387 / 8e-124 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G32090 382 / 1e-121 early-responsive to dehydration stress protein (ERD4) (.1) AT4G02900 381 / 2e-121 ERD (early-responsive to dehydration stress) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091200 [exp] 1195 / 0 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.004G115800 [exp] 892 / 0 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.002G113800 [exp] 554 / 0 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.003G200900 [exp] 408 / 2e-132 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.001G133800 [exp] 385 / 1e-122 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G006000 [exp] 379 / 1e-120 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.014G156100 [exp] 378 / 2e-120 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.003G099800 [exp] 377 / 1e-119 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.002G226800 [exp] 375 / 2e-119 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037139 [exp] 951 / 0 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10030431 [exp] 934 / 0 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10005223 [exp] 819 / 0 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10004550 [exp] 520 / 2e-175 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004597 [exp] 519 / 5e-175 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10010365 [exp] 471 / 3e-157 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10036791 [exp] 439 / 3e-145 AT1G69450 426 / 7e-140 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10035300 [exp] 403 / 4e-130 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 403 / 6e-130 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10020032 [exp] 388 / 4e-124 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [poplar] [flax] Anoctamin-like PF02714 [poplar] [flax] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate CL0416 [poplar] [flax] PF13967 [poplar] [flax] RSN1_TM Late exocytosis, associated with Golgi transport
Representative CDS sequence Show only first row Show all	>Potri.010G164100.4 pacid=42796978 polypeptide=Potri.010G164100.4.p locus=Potri.010G164100 ID=Potri.010G164100.4.v4.1 annot-version=v4.1 ATGCTCGTCTCGGCTATTCTAACATCTGTGGGGATAAACTCTGCTCTATGTGTTATATTCCTGGTACTGTATTCTATATTGAAGAAACAACCAAGTTATT ATGAAGTTTTTGCACCGCGCTTGCTCGCGGAAGGGAGTTCTAAACAGGGAAGCCGTTTCAATCTTGAAAGGCTATTACCATCTGCTGGTTGGTTGTCAAA GGCATGGAAGCTATCTGAAGAGGAAATGTTATCTTCTTCAGGCTTGGATGCTGTGGTGTATATGCGAATGATAACTTTCTGTTTGAAAGTGTTTTCATTC GCTGGGATAATAGGAATACTTATTCTTCTCCCAGTGAACTGTTCGGGGACTGAGCTTGACCAAATTGATTTTGCTGATTTGTATACTAGCTCACTGGATG CGTTTACCATTTCAAATGTAAATAGTGGCTCAAAGTTGTTATGGATTCACTTCTCTGCTGTATATGCTGTCACTATTTTCATATGCTATCTACTGTATTA TGAATATAACTATATTTCTTCAAAAAGGATTGCATATTTTTATTCAGCCAAACCTCAGCCACATCAGTTCACCATTTTAGTTCGCAATATCCCTGTCTCA GTTGGAAGCAATGTCAGTGACAGTGTTGAGAGCTTCTTTACAGAGTATCACCCTACCACATATCTTTCACATACAGTTCTTCGTCGAACTAGCAAAGTTC AGAGCCTCATTAAAGATGCAAACAAATTGTACAAGAGGCTTCTTCACTTGCAATCAGAACCATCTGAACAGAAGTATAAGCGAGTTGGATTGTGTGGACA TAAGGTTGATCTTTTGGATCATTATGGGAAGAGGTTAGATGACTTAGAGCAGAATGTGAGATTGAAGCAATCAGAGGCATTATTGGCAGAAGATACTCAT GCTGCCTTTGTGTCATTCAAGTCGCGGTATGGTGCTTCCACTGTTTTCCATCTGCAACAATCAATCAACCCCACACATTGGCTCACAGAAGAAGCTCCTG CACCTGATGATGTCTATTGGCCTTTTCTTTCATCATCATTCATGCGAAGATGGATTTCTAAGCTTGTGGTTGTAGTTGCATGTATTCTTCTTACAGTTTT GTTCCTTATTCCTGTTGTAGTTGTACAAGGTCTCACTAACCTGAGTCAGCTGGAAGTTTGGTTTCCATTCCTGAAAAGCATTCTAGACATATCATTTGTC AGTCAAGTAATTACAGGATATCTTCCTAGTCTGATTCTTCAGTTGTTCCTAAAGGCCGTGGCCCCAATCATGGTGTTCCTTTCCTCCATTCAAGGATACA TTTCTCATAGCATGATAGAAAAGAGTGCATGTAAGAAAGTACTCTGGTTCACAATATGGAACATCTTCTTCGCCACTGCATTTTCTGGGTCCATATTTTA TCAGGTTTCCATCTTTCTTGACCCCAAGAAAATTCCTGCAAAGTTGGCTGTTGCTGTTCCAGCTCAGGCGTCATTTTTCATTACTTATGTTGTCACTTCT GGATGGACGAGCACTACATCAGAACTTGCTCGCATATTCCCTCTAATTTGCCATCTAACAACTAAGTGTTGTGCTAAAAGTACGGATGAAGGAATTGAAG TTCCATCTATTCCTTACCACAAGGACATTCCGAGGATTCTTTTCTTTGGACTTCTTGGCATTACGTATTTCTTCCTAGCTCCAGTCATTCTGCCCTTCCT TCTGGTGTATCTCTGTCTCGCATACATCATCTTCCGTAACCAGTTCATAAATGTATACGCTCCCAAGTATGAAACTGCGGGGAAATTTTGGCCTATCGCT CACAATTCGATGATATTTTCTCTGGTACTCATGCATGCAATTGCAGTGGGAATTTTTACTCTGAAGAAGCTCCCTCTTGCATCAACCTTAATTATTCCTC TTCCAGTTCTCACGCTTCTGTTTAATGAGTACTGCCGGAAACGCTTCCTTCCGTTTTTTATCGCTTATCCTGCTGAGGTGTTGATAAAGAAGGACATGGA AGATCAAAATGATGCTACAATGTCTGAGTTTCTTGATAGATTGGTCACCGCCTATCGGGACCCAGCTCTAATGCCGATTCAGTACTCTGCAGACATTGAC AGCCTTAACAGACCGCTTATATCATCTGCTGGAGTTTGA
AA sequence Show only first row Show all	>Potri.010G164100.4 pacid=42796978 polypeptide=Potri.010G164100.4.p locus=Potri.010G164100 ID=Potri.010G164100.4.v4.1 annot-version=v4.1 MLVSAILTSVGINSALCVIFLVLYSILKKQPSYYEVFAPRLLAEGSSKQGSRFNLERLLPSAGWLSKAWKLSEEEMLSSSGLDAVVYMRMITFCLKVFSF AGIIGILILLPVNCSGTELDQIDFADLYTSSLDAFTISNVNSGSKLLWIHFSAVYAVTIFICYLLYYEYNYISSKRIAYFYSAKPQPHQFTILVRNIPVS VGSNVSDSVESFFTEYHPTTYLSHTVLRRTSKVQSLIKDANKLYKRLLHLQSEPSEQKYKRVGLCGHKVDLLDHYGKRLDDLEQNVRLKQSEALLAEDTH AAFVSFKSRYGASTVFHLQQSINPTHWLTEEAPAPDDVYWPFLSSSFMRRWISKLVVVVACILLTVLFLIPVVVVQGLTNLSQLEVWFPFLKSILDISFV SQVITGYLPSLILQLFLKAVAPIMVFLSSIQGYISHSMIEKSACKKVLWFTIWNIFFATAFSGSIFYQVSIFLDPKKIPAKLAVAVPAQASFFITYVVTS GWTSTTSELARIFPLICHLTTKCCAKSTDEGIEVPSIPYHKDIPRILFFGLLGITYFFLAPVILPFLLVYLCLAYIIFRNQFINVYAPKYETAGKFWPIA HNSMIFSLVLMHAIAVGIFTLKKLPLASTLIIPLPVLTLLFNEYCRKRFLPFFIAYPAEVLIKKDMEDQNDATMSEFLDRLVTAYRDPALMPIQYSADID SLNRPLISSAGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69450			Early-responsive to dehydratio...		Potri.010G164100 [exp]	0	1
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.005G241700 [exp]	1.73	0.8760
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.004G057700 [exp]	2.00	0.8901
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.004G139900 [exp]	5.47	0.8184
AT4G32140			EamA-like transporter family (...		Potri.006G266400 [exp]	5.65	0.8181
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	5.83	0.8793
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G027600 [exp]	5.91	0.8402	CESA2.3
AT5G65550			UDP-Glycosyltransferase superf...		Potri.010G182650 [exp]	6.63	0.8306
AT3G59310			Eukaryotic protein of unknown ...		Potri.003G030800 [exp]	8.06	0.8523
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.016G083600 [exp]	8.24	0.8580
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207600 [exp]	9.48	0.8517

Compare expression of checked genes

Potri.010G164100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.