Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14000 756 / 0 VIK VH1-interacting kinase (.1) AT3G58760 308 / 2e-100 Integrin-linked protein kinase family (.1) AT4G18950 294 / 2e-95 Integrin-linked protein kinase family (.1) AT2G31800 263 / 5e-83 Integrin-linked protein kinase family (.1) AT2G43850 259 / 3e-81 Integrin-linked protein kinase family (.1.2) AT3G59830 247 / 9e-77 Integrin-linked protein kinase family (.1) AT4G38470 189 / 6e-54 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 188 / 7e-54 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 188 / 1e-53 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 178 / 2e-51 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090800 [exp] 817 / 0 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.004G064400 [exp] 306 / 3e-100 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.002G158950 [exp] 290 / 4e-94 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.017G007800 [exp] 263 / 3e-83 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 263 / 5e-83 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.004G179457 [exp] 194 / 4e-57 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 192 / 3e-56 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 194 / 1e-55 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 191 / 9e-55 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030435 [exp] 768 / 0 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 765 / 0 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10030387 [exp] 292 / 4e-95 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10029277 [exp] 292 / 6e-94 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10037851 [exp] 277 / 8e-89 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10008350 [exp] 229 / 1e-68 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10027107 [exp] 215 / 3e-63 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10012517 [exp] 197 / 6e-57 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 194 / 3e-56 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 188 / 1e-53 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.010G164500.1 pacid=42798339 polypeptide=Potri.010G164500.1.p locus=Potri.010G164500 ID=Potri.010G164500.1.v4.1 annot-version=v4.1 ATGAGTTCCGATACTCCCTCCTCCGCCGCCGACACTAACACGGCTGGAGCTTCTTCTTCATCACCGTCGGAGACGATGACGGACAAGCAGAAGGAGAAAG CGAGAGTGAGCAGGACGTCGTTGATACTGTGGCACGCTCACCAAAACGACGCCGCTGCCGTCCGGAAGCTTTTAGAGGAAGATCCGTCTCTCGTTCGCGC TATGGATTACGATAGCCGGACTCCGCTCCACGTGGCATCTCTCCATGGATGGGTCGATGTCGCTAAGTGCTTGATTGAATTTGGAGCCGATGTCAACGCC CAAGATCGCTGGAAAAATACGCCACTAGCTGATGCAGAAGGCGCAAAAAAGCACAACATGATTGAACTGCTAAAATCATACGGTGGCTTGTCATATGGCC AAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCACCCCCTCTACCAAACAAGTGTGACTGGGAAATTGAACCTTCTGAGCTGGACTTCTCAAACTCAAA CATTATTGGAAAGGGATCTTTTGGTGAGATTTTGAAAGCCAATTGGCGTGGAACACCGGTAGCTGTCAAACGCATTCTTCCATCCCTCTCAGATGATAGA TTGGTGATTCAGGACTTCAGACATGAGGTTAATTTGCTAGTCAAGCTTCGCCATCCTAATATAGTCCAGTTTCTGGGAGCTGTCACTGATAGGAAGCCCC TTATGTTAATTACTGAATATCTACGAGGGGGTGATCTTCATCAGTACCTCAAGGAAAAGGGTGCACTAAGTCCATCAACAGCCATAAACTTTGCGTTGGA CATTGCCAGAGGCATGGCATATCTTCACAATGAACCAAATGTCATTGTTCACAGAGACCTAAAACCAAGGAATGTTCTTTTAGTCAACTCCAATGCAGAC CATTTGAAAGTTGGAGATTTTGGTCTAAGCAAGCTCGTCAAGGTTCAAAACTCACATGATGTGTACAAAATGACTGGCGAGACAGGAAGTTACCGGTATA TGGCTCCTGAAGTTTTCAAGCACCGGAAATACGATAAGAAAGTTGATGTTTTCTCTTTTGCGATGATACTGTATGAGATGCTTGAAGGGGAGCCGCCCTT TTCGGATTTTGAGCCTTATGAAGCAGCCAAGTATGTGGCAGAAGGACACAGGCCACCATTTCGTTCTAAAGGATTTAATATCTCTGACCTCAGAGAGTTG ACGGATCAGTGTTGGGCTGCTGACATGAATAGAAGGCCTGCTTTCTTAGAAATTCTTAAGAGACTTGAAAAGATCAAGGAAAACTTACCGACAGATCATC ACTGGAATTTATTCAATCCATAG
AA sequence Show only first row Show all	>Potri.010G164500.1 pacid=42798339 polypeptide=Potri.010G164500.1.p locus=Potri.010G164500 ID=Potri.010G164500.1.v4.1 annot-version=v4.1 MSSDTPSSAADTNTAGASSSSPSETMTDKQKEKARVSRTSLILWHAHQNDAAAVRKLLEEDPSLVRAMDYDSRTPLHVASLHGWVDVAKCLIEFGADVNA QDRWKNTPLADAEGAKKHNMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIEPSELDFSNSNIIGKGSFGEILKANWRGTPVAVKRILPSLSDDR LVIQDFRHEVNLLVKLRHPNIVQFLGAVTDRKPLMLITEYLRGGDLHQYLKEKGALSPSTAINFALDIARGMAYLHNEPNVIVHRDLKPRNVLLVNSNAD HLKVGDFGLSKLVKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGEPPFSDFEPYEAAKYVAEGHRPPFRSKGFNISDLREL TDQCWAADMNRRPAFLEILKRLEKIKENLPTDHHWNLFNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.010G164500 [exp]	0	1
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.010G230500 [exp]	2.44	0.7929
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	6.32	0.7341	Pt-RPT2.2
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	8.30	0.7222	RAB11.4
AT3G58730			vacuolar ATP synthase subunit ...		Potri.001G331800 [exp]	12.12	0.6945
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065300 [exp]	13.19	0.6973
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Potri.005G100500 [exp]	14.28	0.7101
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Potri.003G044700 [exp]	15.16	0.6618
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.013G066000 [exp]	17.94	0.6479
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.010G164200 [exp]	21.84	0.6641	ATS9.1
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.016G028000 [exp]	27.16	0.6384	RPT1.2

Compare expression of checked genes

Potri.010G164500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.