Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 271 / 5e-93 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 267 / 2e-91 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 240 / 5e-81 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G29070 222 / 2e-73 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03040 170 / 6e-54 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 159 / 9e-49 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G09580 154 / 9e-47 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 136 / 4e-40 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 101 / 2e-26 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090700 [exp] 367 / 5e-131 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.018G145544 [exp] 274 / 2e-95 AT1G26690 194 / 8e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 265 / 1e-90 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 265 / 2e-90 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 162 / 6e-50 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G210900 [exp] 149 / 4e-45 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 147 / 2e-44 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036786 [exp] 273 / 2e-93 AT1G26690 275 / 3e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030436 [exp] 257 / 6e-87 AT1G26690 263 / 2e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10037143 [exp] 238 / 1e-80 AT1G26690 249 / 2e-85 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10005227 [exp] 206 / 1e-67 AT1G26690 231 / 4e-77 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030693 [exp] 198 / 1e-64 AT1G26690 218 / 2e-72 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10026625 [exp] 195 / 4e-63 AT1G26690 197 / 9e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041939 [exp] 150 / 3e-45 AT1G21900 286 / 1e-98 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10001615 [exp] 148 / 9e-45 AT1G09580 294 / 4e-102 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022972 [exp] 148 / 1e-44 AT1G09580 297 / 3e-103 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [poplar] [flax] GOLD-like PF01105 [poplar] [flax] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Potri.010G164600.1 pacid=42798027 polypeptide=Potri.010G164600.1.p locus=Potri.010G164600 ID=Potri.010G164600.1.v4.1 annot-version=v4.1 ATGTCAAGATTCAACCTTTATCTCCTCCTAATAACAACTGTGATTGCGATTTTATCCTCTACATCAAAATCAATTCGTTTCGAGCTAGAATCAGGAAACA CGAAATGCATAGCAGAAGACATCAAAAGCAATTCTATGACTGTTGGGAAGTACAGTATTGTTAATCCCCATGATGGCCAGCCCTTGCCCGACTCGTATAA ACTCACTGTCAGGGTGACATCGAGTTCTGGGAATAATTATCATCATTCAGAGCTTGTGGAATCAGGGCAGTTTGCTTTCACGGCGTCGGAGGCAGGGGAT TACATGGCGTGTTTTTGGGCGGCGGATCATAAGCCAGCAGTGACTTTGAATATTGATTTTGATTGGAAGACTGGTGTGGCTGCTAAGGATTGGACTAATG TTGCCAAGAAAGGCTCTGTTGATGTTATGGAATTGGAGCTGAAGAAAATGTATGACACAGTTATTTCCGTTCAAGAGGAAATGAATTATCTTCGTGAAAG AGAAGAAGAAATGCAAGATCTGAACATATCTACTAATGTAAAAATGGCCTGGTTGAGTTTTCTTTCGATCGTCGTGTGTTTATCTGTGGCAGGCTTGCAA GTGTGGCACTTGAAGACTTTTTTCCAGAAAAAGAAGCTCATTTAG
AA sequence Show only first row Show all	>Potri.010G164600.1 pacid=42798027 polypeptide=Potri.010G164600.1.p locus=Potri.010G164600 ID=Potri.010G164600.1.v4.1 annot-version=v4.1 MSRFNLYLLLITTVIAILSSTSKSIRFELESGNTKCIAEDIKSNSMTVGKYSIVNPHDGQPLPDSYKLTVRVTSSSGNNYHHSELVESGQFAFTASEAGD YMACFWAADHKPAVTLNIDFDWKTGVAAKDWTNVAKKGSVDVMELELKKMYDTVISVQEEMNYLREREEEMQDLNISTNVKMAWLSFLSIVVCLSVAGLQ VWHLKTFFQKKKLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69460			emp24/gp25L/p24 family/GOLD fa...		Potri.010G164600 [exp]	0	1
AT5G27430			Signal peptidase subunit (.1)		Potri.006G234600 [exp]	2.00	0.8350	SPP.3
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Potri.014G122800 [exp]	3.74	0.8405
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.003G143600 [exp]	10.19	0.7771	BIP.1
AT5G25360			unknown protein		Potri.001G192700 [exp]	10.39	0.7538
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Potri.002G198000 [exp]	10.48	0.7593
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Potri.010G081700 [exp]	12.12	0.8282
AT1G27330			Ribosome associated membrane p...		Potri.003G171100 [exp]	12.44	0.7951
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.003G111100 [exp]	12.84	0.7118
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.016G019800 [exp]	13.74	0.7612
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Potri.006G149700 [exp]	15.19	0.7322

Compare expression of checked genes

Potri.010G164600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.