Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14040 1002 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 940 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 872 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 864 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 860 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 809 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 797 / 0 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 724 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 724 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 420 / 2e-135 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G165800 [exp] 1388 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 1375 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 1283 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 845 / 0 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 843 / 0 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 680 / 0 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 426 / 2e-137 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 421 / 8e-136 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G132300 [exp] 421 / 1e-135 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030439 [exp] 1077 / 0 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 1038 / 0 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 981 / 0 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 979 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 974 / 0 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 924 / 0 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 527 / 0 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 519 / 4e-176 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 497 / 9e-171 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 425 / 6e-137 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain CL0182 [poplar] [flax] IT PF03124 [poplar] [flax] EXS EXS family
Representative CDS sequence Show only first row Show all	>Potri.010G164900.1 pacid=42798969 polypeptide=Potri.010G164900.1.p locus=Potri.010G164900 ID=Potri.010G164900.1.v4.1 annot-version=v4.1 ATGAAGTTTGGGAAAGAGTTCACAGCGCAAGCGGTGCCTGAATGGCAAGAAGCATACATGGACTACGATTTTCTCAAGACCCTTTTGAAAGAGATACAAA GATTCCGACTAAGAACCAAGCCACCTGCAACCAACCCAGGAGGCCTAAAAAGAAAGCTCACACTATATAGAGCTTTTAGTGGCCTGACACGACGGAATGG TACTAACTACACCCCTAGCCCTTCTTCTCCTGATCTTGAACTACATCCTATTTTGGTGAACTCTGTGAACCTCGATGGCTCTCAAAGCTATCGGACTGCA TTTGTTATGCCTTTTGTCCCAGGAGGAGAATACGAGCTTGTGTTTTTCAGAAGGCTTGATGACGAGTTCAATAAAGTGGACAAGTTTTACAGGTCTAAAG TGGAGGAGGTATTGAAAGAGGCTGCGATGTTGAATGAGCAAATGGATGCTTTGATTGCTTTCAGGATAAAAGTGGAGAATCCCGCTGGGTGGTATGATAG AGTGGCAGATATGACTCGTCTTGCTTCAGACGTTGCAGCTTCTACTGCTGTATTGGCAGCTTCTTCTCCATCTGGAGCTAGAGAACGCAGAAGAGGACTA CATTTAATGGATGCGATTGAGGAAGGCCAAAGCTTGCATGCGCAGTCAGGTGAATCAGACAATGATAAAGTGGAGAAGGAAAGCGATAATATTGACCAGA AGGAAGAAGAAGAAGAGAAGCCGAAGAGCATGGTCAGAAGTACCTTTAGGCCAGCTCCATTAGAAATACTAAACCGTGTGAAGATTAACAACACACTGGC GACACCTCGCTCGACCATCAAAAGCTTCCTTAAAGTTCCCCAACAAACAGAACTTAAATTTACAAGGGAAAATCTTAGAAAAGTTGAAGAACAACTCAAG GGTGCTTTTTTTGAATTTTACCAAAAGCTTCGCCTTCTTAAGAGTTACAGCTTCTTGAATACGTTGGCGTTTTCAAAAATTATGAAGAAGTATGATAAGA TTACCACAAGGAATGCATCACAAGTTTACATGAAAATGGTGGATAACTCCTTCCTTGGAAGCTCTGATGAAGTTACCAAGCTTATGGAAAGGGTTGAGGC AACATTCATTAAGCATTTCTCGAACTCAAATCGGAGTAACGGCATGCGCGTCTTAAGGCCAAAAGCGAAAAAAGAGAGACATAGAATAACATTTTACATG GGTTTCTTTTCTGGCTGCACAGTAGCCCTGATAATTGCCCTTGTTTTAATCGTAAAAGCCCGCAAAATCATGAAAAAGCCAGGAAGGATCACATACATGC AAACAATGTTTCCTCTTTACAGTTTGTTTGGATTAATTGTTCTACACGTGCTCATGTATGCTGCTAATATATACTTCTGGAAGCGGTACCGAGTGAATTA CTCCTTTATTTTTGGTTTCAAACGAGAAACCGAACTGGGCTACAGACAAGTTCTTCTTCTCGGTTTTGGTATTGCAGCACTAGCTTTATGCAGTGTGCAC TTAAACCTTCACATGGAGATGGACCCTAAAACGAAAGAGTACGGAGAGTTTACAGAACTTCTCCCTCTGAATGTGTTGATATTCCTCCTCATCATATTGC TCTGGCCATTCAACATGTTTTATTGCTCATCTCGCTTCTTCCTCCTCACGTGTATCTTTCACTGTATTGCTGCTCCTCTCTACAAGGTAACGCTCCCTGA TTTTTTCTTGGCAGACCAACTTACTAGCCAGGTGCAATCCCTTAGAAGCCTGGAGTTCTACATTTGCTATTACGGTTGGGGGGACTATAAACACCGACGG AGCAATTGCAAAGAAAGTCCTGTTTTCACAACTTTCTCATTCATTGTTGCTGTGATTCCATACTTGTGTCGCCTTCTTCAGTGCCTCCGGCGCTTGTTTG AAGAGAAAGATCCGATGCAAGGATACAACGGATTGAAGTATTTTTTGACAGTAGTAGCTGTTTGTTTGAGGACAGCTTACAACATTAACAAAGGGGATAA TTGGAAAGCAATAGCATGGGTTTTCTCATCCATTGCAGCAATCTTTGGCACATATTGGGATCTTGTTTTTGACTGGGGGCTTCTTCAGCGCCATTCTAAG AATAGATGGCTGAGAGACAAACTCCTTGTCCCTCACAAATCAGTATATTTTGGAGCCATGGTCTTGAATATATTGCTGAGATTTGCTTGGCTGCAAACAG TATTGAACTTCAGGCTTACTTCCTTGCACAAAGAAACAATGATTACCCTTATGGCCAGCCTCGAGATCATTCGCCGTGGCATGTGGAATTTCTTTAGGTT GGAAAATGAACATTTGAACAACGTTGGAAAATATCGAGCATTCAAGTCTGTGCCTTTACCGTTCAACAATGTGGAAGATGACGACGACGATGAATAA
AA sequence Show only first row Show all	>Potri.010G164900.1 pacid=42798969 polypeptide=Potri.010G164900.1.p locus=Potri.010G164900 ID=Potri.010G164900.1.v4.1 annot-version=v4.1 MKFGKEFTAQAVPEWQEAYMDYDFLKTLLKEIQRFRLRTKPPATNPGGLKRKLTLYRAFSGLTRRNGTNYTPSPSSPDLELHPILVNSVNLDGSQSYRTA FVMPFVPGGEYELVFFRRLDDEFNKVDKFYRSKVEEVLKEAAMLNEQMDALIAFRIKVENPAGWYDRVADMTRLASDVAASTAVLAASSPSGARERRRGL HLMDAIEEGQSLHAQSGESDNDKVEKESDNIDQKEEEEEKPKSMVRSTFRPAPLEILNRVKINNTLATPRSTIKSFLKVPQQTELKFTRENLRKVEEQLK GAFFEFYQKLRLLKSYSFLNTLAFSKIMKKYDKITTRNASQVYMKMVDNSFLGSSDEVTKLMERVEATFIKHFSNSNRSNGMRVLRPKAKKERHRITFYM GFFSGCTVALIIALVLIVKARKIMKKPGRITYMQTMFPLYSLFGLIVLHVLMYAANIYFWKRYRVNYSFIFGFKRETELGYRQVLLLGFGIAALALCSVH LNLHMEMDPKTKEYGEFTELLPLNVLIFLLIILLWPFNMFYCSSRFFLLTCIFHCIAAPLYKVTLPDFFLADQLTSQVQSLRSLEFYICYYGWGDYKHRR SNCKESPVFTTFSFIVAVIPYLCRLLQCLRRLFEEKDPMQGYNGLKYFLTVVAVCLRTAYNINKGDNWKAIAWVFSSIAAIFGTYWDLVFDWGLLQRHSK NRWLRDKLLVPHKSVYFGAMVLNILLRFAWLQTVLNFRLTSLHKETMITLMASLEIIRRGMWNFFRLENEHLNNVGKYRAFKSVPLPFNNVEDDDDDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G164900 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G312600 [exp]	2.44	0.9664
AT4G13580			Disease resistance-responsive ...		Potri.001G054100 [exp]	4.24	0.9594
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G315300 [exp]	4.47	0.9523
AT5G06200		CASP4	Casparian strip membrane domai...		Potri.006G208800 [exp]	6.00	0.9553
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G125600 [exp]	6.92	0.9505	Pt-HMA5.3
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G022000 [exp]	10.39	0.9392
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026032 [exp]	11.48	0.9363
AT5G05340			Peroxidase superfamily protein...		Potri.013G156800 [exp]	11.83	0.9233	RIP1.3
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085600 [exp]	12.68	0.9401
AT2G45750			S-adenosyl-L-methionine-depend...		Potri.015G139000 [exp]	14.86	0.9352

Compare expression of checked genes

Potri.010G164900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.