Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69480 88 / 2e-21 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 64 / 5e-13 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 64 / 6e-13 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 59 / 2e-11 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 59 / 3e-11 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 59 / 5e-11 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 57 / 2e-10 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 52 / 6e-09 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 46 / 1e-06 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090300 [exp] 174 / 5e-52 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165400 [exp] 155 / 6e-49 AT1G69480 115 / 2e-29 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 81 / 7e-19 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 74 / 2e-16 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 72 / 8e-16 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 69 / 1e-14 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 69 / 1e-14 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 62 / 3e-12 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 47 / 6e-07 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036779 [exp] 93 / 4e-23 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 91 / 2e-22 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 79 / 4e-18 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 79 / 5e-18 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 72 / 8e-16 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036782 [exp] 70 / 4e-15 AT1G14040 322 / 4e-103 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 67 / 7e-14 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10031081 [exp] 61 / 7e-12 AT1G14040 191 / 9e-56 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10035467 [exp] 45 / 5e-07 AT1G14040 111 / 6e-30 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037146 [exp] 45 / 2e-06 AT4G25350 369 / 2e-121 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Potri.010G165001.1 pacid=42800292 polypeptide=Potri.010G165001.1.p locus=Potri.010G165001 ID=Potri.010G165001.1.v4.1 annot-version=v4.1 ATGGTCTTAAAAAGAATACTGGAAGAGATCTTGCTGTACAAGCAAAGCAGGCAACCCTCAACACCTTTGAGATCCTTACACCACAAATTAACTTTGCACA GACCCTTCAGTGGACTAAACCTGCAATCTACCGATCTCTCCAGTAAAGGAGATATTGAGGACCAAGTGATAGATGTTAATGCGTTGCCCCAAGATGGTTG TAGAAAGTTTTACACGACTCAGTTCCTGAGGGAGTCTGAAGAAGGAGGCGAACTAGAGGTTAAGTTCTTTAAGAAACTTGATGAACAACTTAACAAGTTT AACACTTTTTACAAGGATAAGTTGGATGAGATGAAGCATCTTTGCTGA
AA sequence Show only first row Show all	>Potri.010G165001.1 pacid=42800292 polypeptide=Potri.010G165001.1.p locus=Potri.010G165001 ID=Potri.010G165001.1.v4.1 annot-version=v4.1 MVLKRILEEILLYKQSRQPSTPLRSLHHKLTLHRPFSGLNLQSTDLSSKGDIEDQVIDVNALPQDGCRKFYTTQFLRESEEGGELEVKFFKKLDEQLNKF NTFYKDKLDEMKHLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165001 [exp]	0	1
AT4G21300			Tetratricopeptide repeat (TPR)...		Potri.011G156800 [exp]	9.38	0.8009
AT4G31930			Mitochondrial glycoprotein fam...		Potri.006G261601 [exp]	10.90	0.8028
AT5G05800			unknown protein		Potri.005G135800 [exp]	11.91	0.7168
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Potri.013G039600 [exp]	16.70	0.7962
					Potri.017G069550 [exp]	17.88	0.8364
AT1G55750			BSD domain (BTF2-like transcri...		Potri.005G061432 [exp]	19.36	0.7843
AT1G12300			Tetratricopeptide repeat (TPR)...		Potri.019G062266 [exp]	22.38	0.8139
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.003G214100 [exp]	24.91	0.7777
AT1G15780			unknown protein		Potri.003G025500 [exp]	30.33	0.7401
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	32.07	0.7622

Compare expression of checked genes

Potri.010G165001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.