Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14040 1032 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 972 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 896 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 894 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 886 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 847 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 743 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 728 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 722 / 0 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 437 / 1e-141 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G165300 [exp] 1465 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 1401 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 1316 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 905 / 0 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 875 / 0 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 687 / 0 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G132300 [exp] 439 / 2e-142 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 437 / 4e-142 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 436 / 4e-141 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030439 [exp] 1119 / 0 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 1075 / 0 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 1029 / 0 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 1023 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 1014 / 0 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 963 / 0 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 555 / 0 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 531 / 0 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 525 / 3e-178 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 433 / 4e-140 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [poplar] [flax] IT PF03124 [poplar] [flax] EXS EXS family
Representative CDS sequence Show only first row Show all	>Potri.010G165800.1 pacid=42797788 polypeptide=Potri.010G165801.1.p locus=Potri.010G165800 ID=Potri.010G165800.1.v4.1 annot-version=v4.1 ATGAAGTTTGGGAAAGAGTTCAAAGCGCAAGCGGTGCCTGAATGGCAAGAAGCATACATGGACTACGATTTTCTCAAGACCCTTTTGAAAGAGATACAAA GTTTCCGACTAAGAACCAACCCACCTGCAACCAACTCAGGAGGCCTAAAAAGAAAGCTCACACTATATAGAGCTTTTAGTGGCCTGACACGACGGAATAG TACTAACTACACCCCTATGAGCCCTTCTTCTCCTGATCTTGAACTACAACCTATTTTGGTGAATTCTGTGAACCTCGCTGGCTCTCAAAGCTATCAGACT ACATTTCTTATGCCTACTGTCCGAGGAGGAGAATACGAGCTTGTGTTTTTCAGAAGGCTTGATGACGAGTTCAATAAAGTGGACAAGTTTTACAGGTCTA AAGTGGAGGAGGTATTGAAAGAGGCTGAGATGTTGAATAAGCAAATGGATGCTTTGATTGCTTTCAGGATAAAAGTGGAGAATCCCGCTGGGTGGTCTGA TAGAGTGGCAGATATGACTCGTCTTGCTTCAGACGTTGCAGCTTCTACTGCTGCATTGGCAGCTTCTTCTCCATCTGGAGCTAGAGAACGCAGAAGAGGA CTTCATTTAATGGATGCGATTGAGGAAGGGCAAAGCTTGCATGAGCAGTCAGATGAATCAGACCATGATAAAATGGACAAGGAAAGCGATAATATTGACC AGAAGGAAGAAGAAGAAGAAGAAGAAGAGAAGCCGAAGAGCATGGTCAGAAGTACCTTTAGGCCAGCTCCATTAGAAATACTAAACCGTGTGAAGATTAA CAACACACTGGCGACACCTCGCTCGACCATCAAAAGCTTCCTTAAAGTTCCCCAACAAACAGAACTTAAATTTACAAGGGAAAATCTTAGAAAAGTTGAA GAACAACTCAAGGGTGCTTTTTTTGAATTTTACCAAAAGCTTCGCCTTCTTAAGAGTTACAGCTTCTTGAATACACTGGCGTTTTCAAAAATTATGAAGA AGTATGATAAGATTACCACAAGGGATGCATCACAAGTTTACATGAAAATGGTGGATAACTCCTTCCTTGGAAGCTCTGATGAAGTTACCAAGCTTATGGA AAGGGTTGAGGCAACATTCATTAAGCATTTCTTGAACTCAAATCGGAGTAAAGGCATGCGCGTCTTAAGGCCAAAAGGGAAAAAAGAGAGACATAGAATA ACATTTTACATGGGTTTCTTTTCTGGCTGCACAGTAGCCCTGTTAATTGCCCTTGTTTTAATCGTAAATGTCCGCAAAATCATGAATAACCCAGGAAGGA ACACATACATGCAAACAATGTTTCCTCTTTACAGTTTGTTTGGATTAATTGTTCTACACGTGCTCATCTATGCTGCTAATATATACTTCTGGAGGCGGTA CCGAGTGAATTACTCCTTCATTTTTGGTTTCAAACGAGAAACCGAACTGGGCTACAGACAAGTTCTTCTTCTCGGTTTTGGTATTGCAGTACTAGCTTTA TGCAGTGTGCACTTAAACCTTGACATGGAGATGGACCCTAAAACGAAAGATTACGAAGCGCTTACAGAACTTCTCCCTCTGAATGTGTTGATATTCCTCC TCATCATATTGCTCTGGCCATTCAACATGTTTTATCGCTCATCTCGCTTCCTCCTCCTCACGTGTATCTTTCACTGTATTGCTGCTCCTCTCTACAAGGT AACACTCCCTGATTTCTTCTTGGCAGACCAACTAACTAGCCAGGTGCAATCCCTTAGAAGCCTGGAGTTCTACATTTGCTATTACGCTTGGGGGGACTAT AAACACAGACGGAACAATTGCAAAGAAAGTCCTGTTTTCATAACTTTCTCATTTATTGTTGCTGTGATTCCATACTGGTCTCGCCTTCTTCAGTGCCTCC GGCGCTTGTTTGAAGAGAAAGATCCGATGCAAGGATACAACGGATTGAAGTATTTTTTGACAATAGTAGCCGTTTGTTTGAGGACAGCTTACAACATTAA CAATGGGGATGGTTGGAGAGCAATAGCATGGGTTTTCTCATCCGTTGCAGCAATCATTGGCACATATTGGGATCTTGTTTTTGACTGGGGGCTTCTTCAG CGCCATTCTAAGAATAGATGGCTGAGAGACAAACTCCTTGTCCCTCACAAATCAGTATATTTTGGAGCCATGGTCTTGAATATATTGCTGAGATTTGCTT GGCTGCAAACAGTATTGAACTTCAGGGTTACTTCCTTGCACGAAGAAACAATGGTTACCCTTGTGGCCAGCCTCGAGATCATTCGCCGTGGCATGTGGAA TTTCTTTAGGTTGGAAAATGAACATTTGAACAACGTTGGAAAATATCGAGCATTCAAGTCTGTGCCTTTACCTTTCAACAATGTGGAAGATGATGACCAC GATGACTAA
AA sequence Show only first row Show all	>Potri.010G165800.1 pacid=42797788 polypeptide=Potri.010G165801.1.p locus=Potri.010G165800 ID=Potri.010G165800.1.v4.1 annot-version=v4.1 MKFGKEFKAQAVPEWQEAYMDYDFLKTLLKEIQSFRLRTNPPATNSGGLKRKLTLYRAFSGLTRRNSTNYTPMSPSSPDLELQPILVNSVNLAGSQSYQT TFLMPTVRGGEYELVFFRRLDDEFNKVDKFYRSKVEEVLKEAEMLNKQMDALIAFRIKVENPAGWSDRVADMTRLASDVAASTAALAASSPSGARERRRG LHLMDAIEEGQSLHEQSDESDHDKMDKESDNIDQKEEEEEEEEKPKSMVRSTFRPAPLEILNRVKINNTLATPRSTIKSFLKVPQQTELKFTRENLRKVE EQLKGAFFEFYQKLRLLKSYSFLNTLAFSKIMKKYDKITTRDASQVYMKMVDNSFLGSSDEVTKLMERVEATFIKHFLNSNRSKGMRVLRPKGKKERHRI TFYMGFFSGCTVALLIALVLIVNVRKIMNNPGRNTYMQTMFPLYSLFGLIVLHVLIYAANIYFWRRYRVNYSFIFGFKRETELGYRQVLLLGFGIAVLAL CSVHLNLDMEMDPKTKDYEALTELLPLNVLIFLLIILLWPFNMFYRSSRFLLLTCIFHCIAAPLYKVTLPDFFLADQLTSQVQSLRSLEFYICYYAWGDY KHRRNNCKESPVFITFSFIVAVIPYWSRLLQCLRRLFEEKDPMQGYNGLKYFLTIVAVCLRTAYNINNGDGWRAIAWVFSSVAAIIGTYWDLVFDWGLLQ RHSKNRWLRDKLLVPHKSVYFGAMVLNILLRFAWLQTVLNFRVTSLHEETMVTLVASLEIIRRGMWNFFRLENEHLNNVGKYRAFKSVPLPFNNVEDDDH DD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165800 [exp]	0	1
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Potri.002G081800 [exp]	9.38	0.7052	Pt-ALDH3.1
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Potri.016G037300 [exp]	19.44	0.7119	Pt-ORG2.3
AT2G28120			Major facilitator superfamily ...		Potri.001G194500 [exp]	20.78	0.7009
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.010G250500 [exp]	22.36	0.7737
AT5G17680			disease resistance protein (TI...		Potri.019G070700 [exp]	26.92	0.7505
AT1G31130			unknown protein		Potri.010G250300 [exp]	29.59	0.7294
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123200 [exp]	30.19	0.7160
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.006G248200 [exp]	39.79	0.7375	Pt-YUC.2
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Potri.010G221200 [exp]	47.62	0.6707
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.015G041900 [exp]	53.10	0.7184

Compare expression of checked genes

Potri.010G165800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.