Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14140 447 / 7e-160 Mitochondrial substrate carrier family protein (.1) AT5G58970 189 / 3e-58 ATUCP2 uncoupling protein 2 (.1.2) AT3G54110 189 / 3e-58 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT4G24570 171 / 4e-51 DIC2 dicarboxylate carrier 2 (.1) AT2G22500 157 / 6e-46 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT5G09470 155 / 6e-45 DIC3 dicarboxylate carrier 3 (.1) AT4G03115 150 / 4e-43 Mitochondrial substrate carrier family protein (.1) AT5G19760 140 / 2e-39 Mitochondrial substrate carrier family protein (.1) AT5G01340 102 / 4e-25 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT1G25380 93 / 2e-21 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G247800 [exp] 193 / 6e-60 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.016G110100 [exp] 188 / 8e-58 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.006G095500 [exp] 187 / 2e-57 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.017G047800 [exp] 173 / 5e-52 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.017G045150 [exp] 172 / 1e-51 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 172 / 2e-51 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.007G113000 [exp] 172 / 3e-51 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.002G104400 [exp] 167 / 1e-49 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.005G157300 [exp] 165 / 9e-49 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030443 [exp] 425 / 4e-151 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10040709 [exp] 190 / 1e-58 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10027755 [exp] 187 / 1e-57 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10035538 [exp] 186 / 7e-57 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 179 / 3e-54 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 176 / 6e-53 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10016445 [exp] 176 / 1e-52 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10024769 [exp] 159 / 1e-46 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 136 / 5e-38 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1) Lus10007883 [exp] 139 / 9e-38 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.010G165900.4 pacid=42797745 polypeptide=Potri.010G165900.4.p locus=Potri.010G165900 ID=Potri.010G165900.4.v4.1 annot-version=v4.1 ATGAACGGAAGCCATGGCCACCAGCAACCAAAAACCCACACAAAAATCCTCCTCACCTCACTGTCAGCCATGGTGGCCGAGATAGCCACTTTCCCGATAG ACTTGACAAAGACCCGGCTCCAGCTCCATTCCTCCACTACTAAACCCACCAGCGCCTTCGTGGTGGCCTCCGAGATCATTCGCCAACAGGGTCCTCTCGG GTTCTACCAGGGCCTTTCTCCTGCCATTTTAAGACACCTATTCTACACTCCGATTCGAATTGTGGGCTATGAAAATTTGAGATATCTTGTGGTGGTTAAC AATGAAGTTGGTGGCGGTGATCTTGTTTCTCTCTCCACCAAAGCTCTCCTTGGTGGACTTTCTGGGGTAATTGCTCAGGTGGTGGCTAGCCCTGCTGATC TGGTTAAGGTGCGGATGCAAGCAGATGGTCGTATTGTGAACCAAGGTCTCCAACCTAGGTACTCGGGGCCTCTTGATGCTTTCAGCAAGATTATAAAGGC AGAAGGCTTTGGCGGACTGTGGAAAGGAGTTTTCCCGAACATCCAAAGAGCCTTTTTGGTGAACATGGGAGAATTAGCATGTTATGACCATGCAAAAAGA TTTATCATCCAGAATCATATATCTGCTGATAATATCTATGCCCACACATTAGCATCCATCATGTCAGGACTTTCTGCAACTGCTTTGAGTTGCCCAGCTG ATGTTGTGAAGACAAGAATGATGAATCAGGCAGCTAGCAAGGATGGCAAGGCTGTATATCAGAGCTCTTACGATTGTCTGGTGAAGACAGTTAGAATGGA GGGATTGAAAGCACTATGGAAGGGATTCTTTCCTACGTGGTCTAGACTTGGTCCATGGCAATTTGTTTTCTGGGTTACTTACGAGAAATTTCGACATGCT GCAGGGCTTTCTTCCTTCTGA
AA sequence Show only first row Show all	>Potri.010G165900.4 pacid=42797745 polypeptide=Potri.010G165900.4.p locus=Potri.010G165900 ID=Potri.010G165900.4.v4.1 annot-version=v4.1 MNGSHGHQQPKTHTKILLTSLSAMVAEIATFPIDLTKTRLQLHSSTTKPTSAFVVASEIIRQQGPLGFYQGLSPAILRHLFYTPIRIVGYENLRYLVVVN NEVGGGDLVSLSTKALLGGLSGVIAQVVASPADLVKVRMQADGRIVNQGLQPRYSGPLDAFSKIIKAEGFGGLWKGVFPNIQRAFLVNMGELACYDHAKR FIIQNHISADNIYAHTLASIMSGLSATALSCPADVVKTRMMNQAASKDGKAVYQSSYDCLVKTVRMEGLKALWKGFFPTWSRLGPWQFVFWVTYEKFRHA AGLSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14140			Mitochondrial substrate carrie...		Potri.010G165900 [exp]	0	1
AT5G13470			unknown protein		Potri.003G203900 [exp]	1.41	0.9205
AT3G18140			Transducin/WD40 repeat-like su...		Potri.016G052800 [exp]	2.44	0.8995
AT1G49510		EMB1273	embryo defective 1273 (.1)		Potri.005G149500 [exp]	2.44	0.9097
AT1G76050			Pseudouridine synthase family ...		Potri.002G016800 [exp]	4.00	0.8967
AT5G63480			unknown protein		Potri.012G099200 [exp]	5.29	0.8624
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.007G067500 [exp]	5.91	0.8873	Pt-UBQ7.1
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	6.92	0.8918
AT3G10350			P-loop containing nucleoside t...		Potri.008G037100 [exp]	7.07	0.8936
AT5G13970			unknown protein		Potri.014G143800 [exp]	7.74	0.8550
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.005G114800 [exp]	7.74	0.8372

Compare expression of checked genes

Potri.010G165900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.