Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03150 368 / 5e-106 EMB1579 embryo defective 1579, ATP/GTP-binding protein family (.1) AT3G22930 49 / 4e-06 CML11 calmodulin-like 11 (.1) AT5G21274 47 / 2e-05 ACAM-6, CAM6 calmodulin 6 (.1) AT5G37780 46 / 3e-05 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 45 / 5e-05 ACAM-4, CAM4 calmodulin 4 (.1.2) AT2G27030 45 / 6e-05 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 45 / 8e-05 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT4G14640 44 / 0.0001 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G56800 44 / 0.0002 ACAM-3, CAM3 calmodulin 3 (.1) AT3G43810 44 / 0.0002 CAM7 calmodulin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G089401 [exp] 109 / 1e-27 ND / Potri.008G089100 [exp] 73 / 1e-14 AT2G04660 0 / 1 anaphase-promoting complex/cyclosome 2 (.1) Potri.012G041000 [exp] 48 / 6e-06 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.010G080900 [exp] 48 / 7e-06 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 47 / 1e-05 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.005G215700 [exp] 46 / 3e-05 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.015G032600 [exp] 45 / 4e-05 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.013G040300 [exp] 45 / 5e-05 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1) Potri.001G222200 [exp] 45 / 0.0001 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030445 [exp] 457 / 5e-137 AT2G03150 373 / 5e-108 embryo defective 1579, ATP/GTP-binding protein family (.1) Lus10026618 [exp] 418 / 1e-123 AT2G03150 355 / 3e-102 embryo defective 1579, ATP/GTP-binding protein family (.1) Lus10041179 [exp] 49 / 2e-06 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10039391 [exp] 49 / 5e-06 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10022589 [exp] 47 / 2e-05 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10027283 [exp] 44 / 0.0002 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 44 / 0.0002 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 44 / 0.0002 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 44 / 0.0002 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10021487 [exp] 43 / 0.0004 AT2G41110 255 / 1e-88 calmodulin 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14443 [poplar] [flax] DBC1 DBC1
Representative CDS sequence Show only first row Show all	>Potri.010G166100.2 pacid=42796876 polypeptide=Potri.010G166100.2.p locus=Potri.010G166100 ID=Potri.010G166100.2.v4.1 annot-version=v4.1 ATGTATTCTTCGAGAGGCAGTAATGCTTATGGCCAGCAATCTTATGGTGCCCAATCTGGCTATACACAAAATCTGGGAACGGCATATTCTGGGAGCTCTG CTGGGGGGCATGATGGGGGCTCTCAACATTCACTGGCTTCTAGGCATTCATTGATTCTGGGTGGTCCTCAGGAAGCTGATGTTGGTGGATACAGAGGCCA TGCTTCGGCCACAGCACATTATGGGAGCCAATACGGGGCTGCCTATGGCTCAACTGCCATGAGTGGTGCTCAACAGGCTCCCACATTGAGTGCCAAAGGG AGTGGAGGGTTGTCATTGGATAGTCGTGGCACCTATCCATCAACTCTGCCTGATTCTCCTAAATTTTCATCAGCTGACTATATCTCATCATCAAGTCATG GATATGGACACAAAAGCGATCAATTGTTTGCAGAAAAAATACCTGATTATCCAGCAATTGACAGACGACCATATGGTGAACGACAAGGTACATATATGGG GAGGGATATGCAAGGTGATACAGCTACACGATATGTCGATTCTGTTGGTTTTGGTCATCAACATCAGCCTGAGATTTATGAACGTATGGATCAAGCTTCA ATTCTTAGACAAGAACAGTTATTGAAACCTCAGTCATTGCAATCCGCTTCTCTTGATGGAGGTGCCAGACAAATTGACTATCTTGCAGCAAGAGGTGCTG CTAGTCGTCATACCACCCAAGATCTCATGTCTTTTGGAGGAAGAATAGATGCCGATCCTCGCAATTCTTCATTACTTAGTTCTTCTACGTACAATGGGCA ACATGCTCCCTCGATATTGGGAGCAGCTCCTAGGAGAAGTGTTGAAGATCTATTGTATCCTCAAAGCTCATCAAATCCCGGATATGGAGTGAGTTTGCCT CCTGGAAGGGACTATGGCACTGGAAAAGGGCTCCATGGAACATCTCTTGAATCTGATTATCTTGGTTCTCATCCAAGGATTAATGAGCGCATGGATGACA GAGCTAGCTATCTTCGAGAATTTGAGCTAAGAGAGGAGGAGCGCCGTCGAGAACTTCTGCGTGAGAGGGAGAAGGATAGAGAAAAGGAACGAGAACGGGA ACGTGAACGGGAACGAGAACGGGAACGGGAACGAGAAAGAAAGCGGGAAAGGGAGCGCATTTTGGAACGACGTGAAAAGGAGAGGGAGAGGGAGAGGGAG AGGGAGAGGGAGCGAGAGCGGAAACGTGGACTCGAAATTAGGCGGGAGCGAACTCCACCAAGAGCTTCAATGGATCGACGTGGTTCCTCTTTGCTGAAAG AGGGGAGATCTTTACGACGTGATTCTCCAAGCCATGAAGCATCACATAGGCGTCATTCACCTGTTAAAGAAAAAAGGAGAGATTATGTCTGCAAGGAAGA GAGGAATCTTACAGCTATTGACTTATATGTTATGGTTGGCACATTCAGTTTGGTGGATATAGAGAGGGATTTTCTATCAATTGATAAGAGATATCCCAAA CTGTTTGCTTCTCCAGAATTTTCTAAGGTCATTGTGAACTGGCCAAAGGGAAACCTGAAACTTTCTATCCATACCCCTGTCAGTTTTGAGCATGATTTTG TTGAGGATAGCAGTGAAGCAGAAAAAAAGGATCTGTCCACGACGTTCTTGTCTCAAAAATTTGGAAAACCAGAGAATGGAAGCACTGTTTGGAATGCAAA GATAATTTTGTTGAGTGGACTTAGCAAGAATGCTCTGGAGGAGCTCTCATCTGAGAAAAGATGTGATGATCGTGTACCCCATATTTGCAATATTCTTAGG TTTGCTGTCCTCAAAAGAGACCGTTCTTTTATGGCTGTTGGTGGACCATGGGATTCTGCTGATGGCGGTGATCCATCAATTGATGATTCTGTTTTAATTC AAACAGCCCTTAGACATGCAAAGGATGTAACTCAACTTGATTTGCACAACTGCCGTAATTGGAACCGTTTTCTTGAGATACATTATGATAGATTTGGCAT TGATGGGTTCTTTAGCCACAGAGAGGTCACTGTTCTGTTTGTTCCAGATTTATCTGAATGTCTTCCTTCATTAGATGCATGGCGAGAGCAATGGCTTGCA CACAAGAAGGCTGTTGCTGATAGAGAACATCAGCTTTCTTTAAAGAAAGAGAGGGCTAGAAAGAAGGAAGGGGAAAAAGATAAAGGAACAGATTCTGCGA GAGATTCTAAGAAGTCGGCTCAAATGGAAAACGTCAAAGAGTCTGCCTCTTCTGTCATCAACAATAAGGATAAAGATGGAAATTACATAAAAGGTAAAAC AACTGAATGCAGGAGTGGTGAAAATGATAAGAAAGCTGAGAAAAAAGATGAACCTGAAACAGCTGACGAAGGCAAGAATGTCGACAAGAAGGACCAGGGG GGGGCTGCTGGTTTGCAGACAGCTGGTACCATGAAGTCTGGAAAGAAGATCATACGGAGAATTGTGAAACAGAAGGTCACTAATAAGACAGCTGATTCTG AGAATTCTATCAGCAAAAAGAATGAACTGGCAGATGAGGGTGTTGAGGGAAACTCTGGAAGATCTGAGATCTCACTTGAGCAGAGTGAATCTCCTGCTGA TACCTCCGGCGTTAAAACTTTTGTAAGAAAAAAAGTTATAAGAAAGGTACCAGTGGGAAAATCTACTCAAAATAAAGAAAATGACTTGCAGTCTGAGATG AAAGCTGGGAAGGACTGCACTGAAGATAAACCAAAGAATACTTCAGATACCAGCACTCCTATAGTTACGCAAGGTACTGGTATCAAAACAACCATAAAAA AGAAAATAATTAAGAAAGTACTTAAAAGAAAGCTCACTGGTGCAGGAGCCAGTGGCGGGACTGGTGACCTTAAGAAAGATGACAAAAAGGATGAGGAAAA GGTTGTTCAGGCAGGTAAAGAAACAGAAAACACTGGGGAAAAAACAGCAGAAACAGGAAACCAGGAGCGCGAGGCAAAAGATTCAGAGAAGAAAGTAATT CATAACACCAAGTCAAAATCCCCAATTGCAGAGAAGCAAGCTAGTGTGCCAATTTTTAACAAAATCAAGGCTGTCAAGGAGGATGAAAAGGAAATTGACC AGAAAAGCAGCTCAGGGACTAAAACTGAAGTTAAGGCTGACAGGCTAAAGGTTGCCCCGAAGGATAGTGCTAATAGCAAGGGAGGAAAGTTGAAGGATGA TGAAAAATCAAAGGAAGAGAAAAAGGACAAGGATGGAAAAGAAGTTAGGGAAAAGAGAAAGCCTGAAGAACCTCCTAGACACCCTGGGTTTATTTTGAAA ACAAAAGGCAACAAGGAATCTAAACCGCGTTTTTTATCACTTTCACTGGACTCACTTTTGGATTACACTGATAAGGATGTTGAAGAATCAACATTTGAGC TTTCACTATTTGCTGAATCTCTATATGAAATGCTTCAGTATCAAATGGGCTCTCGTCTTTTGACATTTCTCCAGAAGGTACGAATAAAATTTGTAACCAA AAGAAATCAATACAAGAGGCAGCGGGAGGAAATAGACGAGAAGGAGAAGGAGAAGGAGAAGGAAAAGGAGAAGGAGAAGGAGAAGGACATGGACATGGAC ATGGACATGGACAAGGAATCATCAAGAAAGCGCCTGAAGACTAGTGAGTTACCTGTGAAAGCTAAATCTGCAAACAGTGAAATGTCAAGTGCAGATCAGC CAAATGATGAAAAGACTGTCATGGAGGAGGATACTTCTGTCGATCCTATTAATGAGACAAAGCAGGAAGAAGAAAGTGAATCTGAGGAAGACCCAGAAGA AGACCCTGAAGAATGTGAAGAAATGGAGGATCCTGAAGAATATGAAGAAATGGATGATGCTGGACATGATTCATCTAATGAGCAAAAAGATGAGGGGAAG ACCAGTAGGGATGCTGAGCATGATGAACCTCTGGCTGGCGATGAAAAAGACAAGGCTGAGGAAGTGGCCCAAGATAAAACTGACATCAAAGATGTAGAGT CAAAAGCCAAGTCTGGTGCAGATTTGTCTGATAAAAAAGATGACAAGGTGAAGACAGAGAAGACAGAGCTGTCTGGGAAGGAGGCTGTGATTGATAAGGA ATTGTTGGAGGCTTTCAGGTTTTTTGACCGGAATCGAACTGGCTACATCAGGGTTGAAGACATGAGGTTGATTATCCACAACTTGGGGAAATTTCTTTCC CACAGGGATGTCAAGGAACTTGTGCAAAGTGCTTTGTTGGAGAGCAACACTGGGAGGGATGACCGCATTCTCTACAATAAGCTGGTGAGAATGACTGGTG TTTGA
AA sequence Show only first row Show all	>Potri.010G166100.2 pacid=42796876 polypeptide=Potri.010G166100.2.p locus=Potri.010G166100 ID=Potri.010G166100.2.v4.1 annot-version=v4.1 MYSSRGSNAYGQQSYGAQSGYTQNLGTAYSGSSAGGHDGGSQHSLASRHSLILGGPQEADVGGYRGHASATAHYGSQYGAAYGSTAMSGAQQAPTLSAKG SGGLSLDSRGTYPSTLPDSPKFSSADYISSSSHGYGHKSDQLFAEKIPDYPAIDRRPYGERQGTYMGRDMQGDTATRYVDSVGFGHQHQPEIYERMDQAS ILRQEQLLKPQSLQSASLDGGARQIDYLAARGAASRHTTQDLMSFGGRIDADPRNSSLLSSSTYNGQHAPSILGAAPRRSVEDLLYPQSSSNPGYGVSLP PGRDYGTGKGLHGTSLESDYLGSHPRINERMDDRASYLREFELREEERRRELLREREKDREKERERERERERERERERERKRERERILERREKERERERE RERERERKRGLEIRRERTPPRASMDRRGSSLLKEGRSLRRDSPSHEASHRRHSPVKEKRRDYVCKEERNLTAIDLYVMVGTFSLVDIERDFLSIDKRYPK LFASPEFSKVIVNWPKGNLKLSIHTPVSFEHDFVEDSSEAEKKDLSTTFLSQKFGKPENGSTVWNAKIILLSGLSKNALEELSSEKRCDDRVPHICNILR FAVLKRDRSFMAVGGPWDSADGGDPSIDDSVLIQTALRHAKDVTQLDLHNCRNWNRFLEIHYDRFGIDGFFSHREVTVLFVPDLSECLPSLDAWREQWLA HKKAVADREHQLSLKKERARKKEGEKDKGTDSARDSKKSAQMENVKESASSVINNKDKDGNYIKGKTTECRSGENDKKAEKKDEPETADEGKNVDKKDQG GAAGLQTAGTMKSGKKIIRRIVKQKVTNKTADSENSISKKNELADEGVEGNSGRSEISLEQSESPADTSGVKTFVRKKVIRKVPVGKSTQNKENDLQSEM KAGKDCTEDKPKNTSDTSTPIVTQGTGIKTTIKKKIIKKVLKRKLTGAGASGGTGDLKKDDKKDEEKVVQAGKETENTGEKTAETGNQEREAKDSEKKVI HNTKSKSPIAEKQASVPIFNKIKAVKEDEKEIDQKSSSGTKTEVKADRLKVAPKDSANSKGGKLKDDEKSKEEKKDKDGKEVREKRKPEEPPRHPGFILK TKGNKESKPRFLSLSLDSLLDYTDKDVEESTFELSLFAESLYEMLQYQMGSRLLTFLQKVRIKFVTKRNQYKRQREEIDEKEKEKEKEKEKEKEKDMDMD MDMDKESSRKRLKTSELPVKAKSANSEMSSADQPNDEKTVMEEDTSVDPINETKQEEESESEEDPEEDPEECEEMEDPEEYEEMDDAGHDSSNEQKDEGK TSRDAEHDEPLAGDEKDKAEEVAQDKTDIKDVESKAKSGADLSDKKDDKVKTEKTELSGKEAVIDKELLEAFRFFDRNRTGYIRVEDMRLIIHNLGKFLS HRDVKELVQSALLESNTGRDDRILYNKLVRMTGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	0	1
AT5G43490			unknown protein		Potri.017G058500 [exp]	2.82	0.9530
AT5G08450			unknown protein		Potri.018G145542 [exp]	5.29	0.9324
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.010G132600 [exp]	5.29	0.9358
AT3G25840			Protein kinase superfamily pro...		Potri.010G126900 [exp]	5.47	0.9346
AT5G09880			Splicing factor, CC1-like (.1)		Potri.007G009800 [exp]	6.78	0.9014
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.004G217600 [exp]	7.48	0.9280
AT5G41020	MYB		myb family transcription facto...		Potri.015G095000 [exp]	8.66	0.9312
AT1G74250			DNAJ heat shock N-terminal dom...		Potri.009G018400 [exp]	9.48	0.9136
AT1G76810			eukaryotic translation initiat...		Potri.012G039200 [exp]	10.09	0.9290
AT5G43490			unknown protein		Potri.001G319600 [exp]	10.09	0.8924

Compare expression of checked genes

Potri.010G166100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.