Plant FIBer expression Database

Potri.010G167000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69510 104 / 5e-29 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
AT5G64130 99 / 2e-27 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
AT4G16146 64 / 6e-14 cAMP-regulated phosphoprotein 19-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G102700
[exp]
99 / 5e-27 AT5G64130 159 / 1e-51 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
Potri.004G111900
[exp]
98 / 1e-26 AT5G64130 152 / 4e-49 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
Potri.008G108201
[exp]
70 / 6e-16 AT4G16146 103 / 4e-30 cAMP-regulated phosphoprotein 19-related protein (.1)
Potri.010G141300
[exp]
66 / 2e-14 AT4G16146 105 / 3e-31 cAMP-regulated phosphoprotein 19-related protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030448
[exp]
105 / 3e-29 AT1G69510 123 / 1e-36 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
Lus10026615
[exp]
105 / 7e-29 AT1G69510 123 / 1e-36 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
Lus10009146
[exp]
91 / 5e-24 AT5G64130 150 / 2e-48 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
Lus10036768
[exp]
90 / 2e-23 AT5G64130 116 / 6e-35 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
Lus10028499
[exp]
84 / 4e-21 AT5G64130 143 / 2e-45 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
Lus10037162
[exp]
86 / 6e-20 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10037727
[exp]
62 / 2e-11 AT5G49350 136 / 1e-38 Glycine-rich protein family (.1.2)
Lus10016857
[exp]
53 / 1e-08 AT5G49350 138 / 3e-40 Glycine-rich protein family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04667 Endosulfine cAMP-regulated phosphoprotein/endosulfine conserved region
Representative CDS sequence
>Potri.010G167000.5 pacid=42797880 polypeptide=Potri.010G167000.5.p locus=Potri.010G167000 ID=Potri.010G167000.5.v4.1 annot-version=v4.1
ATGTCAAGCAAGAGCATCGAGGACGTAAAGGAGCAAGAGTTCAGTAACGATGCTGCCGAAAATCCAGTCGAAAACGATGGTGACCAAAAAGAATTGGATC
AAAATGGTGAAAACCCCATGCTCTCACCCGAGCAGGAGGAGGAGATCATCAAGAAAAAATATGGGGGAATGTTATCAAAGAAGAAGCCGTTGATATCTAA
GGATCATGAACGAGCATTTTTTGATTCTGCTGATTGGGCACTGGGAAAGCAAGGAGCTCAAAAACCTAAAGGACCGCTTGAAGCTCTCCGCCCAAAACTT
CAGCCCACTCCGCAACACCAAATGCGTTCAAGGCGCTCAGCTTATGCTCCTGCAGACGATGATGATGCAGAGGATGGCAGTAATCACGCATCACCCGAGC
ATGAGAACTGCGAATCACAAGGTGGGGACGATAAGAACTCAGCTCCTAAAGATCAAACCTGCAACGGTGGAGACGATAAGAACTCTGCTCCTGGTGTTCA
AACCTGCAATGCCTAG
AA sequence
>Potri.010G167000.5 pacid=42797880 polypeptide=Potri.010G167000.5.p locus=Potri.010G167000 ID=Potri.010G167000.5.v4.1 annot-version=v4.1
MSSKSIEDVKEQEFSNDAAENPVENDGDQKELDQNGENPMLSPEQEEEIIKKKYGGMLSKKKPLISKDHERAFFDSADWALGKQGAQKPKGPLEALRPKL
QPTPQHQMRSRRSAYAPADDDDAEDGSNHASPEHENCESQGGDDKNSAPKDQTCNGGDDKNSAPGVQTCNA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69510 cAMP-regulated phosphoprotein ... Potri.010G167000
[exp]
0 1
AT5G15100 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux car... Potri.004G124200
[exp]
1.00 0.9330
AT3G60720 PDLP8 plasmodesmata-located protein ... Potri.002G145400
[exp]
2.82 0.8993
Potri.010G132000
[exp]
3.16 0.9326
AT1G19715 Mannose-binding lectin superfa... Potri.002G030400
[exp]
3.46 0.8968
AT3G04030 GARP Homeodomain-like superfamily p... Potri.013G060200
[exp]
3.74 0.8964 Pt-MYR1.2
AT5G51970 GroES-like zinc-binding alcoho... Potri.012G134900
[exp]
3.87 0.8796 NAD-SDH.1
AT2G23430 ICK1, KRP1 KIP-RELATED PROTEIN 1, Cyclin-... Potri.007G042300
[exp]
6.24 0.8281
AT2G14520 CBS domain-containing protein ... Potri.014G012400
[exp]
6.92 0.8718
AT1G76130 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMY... Potri.002G014300
[exp]
7.48 0.8826
AT5G21910 unknown protein Potri.006G220500
[exp]
8.12 0.8851

Potri.010G167000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.