Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03060 259 / 6e-83 MADS AGL30 AGAMOUS-like 30 (.1.2) AT1G69540 234 / 1e-73 MADS AGL94 AGAMOUS-like 94 (.1) AT1G18750 226 / 3e-70 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT1G77980 87 / 1e-18 MADS AGL66 AGAMOUS-like 66 (.1) AT1G22130 86 / 3e-18 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 80 / 6e-17 MADS AGL67 AGAMOUS-like 67 (.1.2) AT3G57390 58 / 2e-09 MADS AGL18 AGAMOUS-like 18 (.1.2) AT2G03710 57 / 3e-09 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G13790 56 / 9e-09 MADS AGL15 AGAMOUS-like 15 (.1) AT2G26320 53 / 1e-08 MADS AGL33 AGAMOUS-like 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088200 [exp] 565 / 0 AT2G03060 297 / 4e-98 AGAMOUS-like 30 (.1.2) Potri.002G092300 [exp] 80 / 3e-16 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.007G087500 [exp] 77 / 3e-15 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.001G251400 [exp] 59 / 9e-10 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.009G055700 [exp] 56 / 8e-09 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.009G046100 [exp] 54 / 1e-08 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1) Potri.006G048700 [exp] 56 / 2e-08 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.007G120002 [exp] 52 / 2e-08 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.014G074200 [exp] 54 / 3e-08 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026613 [exp] 427 / 2e-148 AT2G03060 308 / 2e-102 AGAMOUS-like 30 (.1.2) Lus10030450 [exp] 417 / 5e-145 AT2G03060 301 / 4e-100 AGAMOUS-like 30 (.1.2) Lus10037166 [exp] 398 / 3e-137 AT2G03060 282 / 2e-92 AGAMOUS-like 30 (.1.2) Lus10036761 [exp] 387 / 3e-133 AT2G03060 284 / 5e-93 AGAMOUS-like 30 (.1.2) Lus10019089 [exp] 259 / 6e-83 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10034464 [exp] 265 / 3e-82 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10022506 [exp] 87 / 1e-18 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10016810 [exp] 80 / 2e-16 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10024823 [exp] 76 / 4e-15 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10017388 [exp] 60 / 5e-10 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.010G167300.1 pacid=42796780 polypeptide=Potri.010G167300.1.p locus=Potri.010G167300 ID=Potri.010G167300.1.v4.1 annot-version=v4.1 ATGTCATGCAATCCTATATGCAAGCTAGTTCAGAACCCTTTCTCCCTCTTTCCCTTCGTCCTCTCCTTCTCCTTTCTCTCTCTACTTTTCTTGGTTCCCA CATTTAAAATTCCTTTCCATCATCCATTTTTTTCTCCTCGTTTGATTTGCTACTTTAGGATGGGTAGGGTTAAGCTAAAGATTAAGAAATTGGAGAATAC AAATGGACGCCAAGCGACCTTTGCCAAGAGGAAACATGGCATCATGAAGAAGGCTAATGAGTTATCAATACTATGTGACATAGACATCATCCTTCTCATG TTCTCACCAACTGGCAAGCCCTCGTTGTGTAAAGGAGCAAGCAGCATTGAAGAAGTAATTACGAAATTCGCTCAGTTAACACCTCAAGAGAGGGCGAAGA GGAAGTTAGAAAGCCTCGAAGCACTGAAGAAAACTTTTAAGAAGCTGGACCATGATGTTAATATACCAGAATTTCTGGGTACAAGTTCTCAGACAATAGA GGACCTGACTAGCCAATCAAGACTGCTGCAGAATCAACTATCTGATGTGCATAAGAGACTGAGTAAATTGAGTTTCTGCAGCTACTGGACCAATCCAGAT AAGATCAACAGCATAGAGCATTTGGGGCAATTGGAAAACTCACTCAGGGAATCACTTAATCAGATTCGATCGTGTAAGGAAAACTTGGGAAAACAGCATC TTATGTCACTAGATTGCCATACTCAGTTTCAAAATGAGATGCATGTACCTTTCAGAATGGGTGCAGAGCAGCAGCTCTCACCTCTTCTGTGGATACCTAA TAATGACAGTCAACATATTATGTTACCAGAGGAACAAAATCTGCTTCCCCATAGGGATGCTGAGTGCACTGCAAGCACCTCTTTTGGGAGTTATTCTGGT TACTTTGGTGCAGGAAAAAATTCTGAGCTATCTAGTTCTGGTCAAGAAAGTGGTATGAATGGTATTCTTGATGAGTTAAATGGAACTGCATCACTGAGGC TACGGTTGGCTGGACAGTACCCTTACTTGCCAGGGCCATATAATCTGAATTTACTGAACGATACAAAATTCCAACCTGCAGCAGAGATGAACATACAAAA AGGCCCTGGGGATTTTAATGTTAGTGGAAGTTTTGAAGCTCCCAAACCTGAGTATGACTCTGGCCCTCATGGCTGGGCTTCTACTTCAGGATCATGTGCT GTTACTATGTTTGATGATCATTTGTATGCTCCGCAACCACACTGA
AA sequence Show only first row Show all	>Potri.010G167300.1 pacid=42796780 polypeptide=Potri.010G167300.1.p locus=Potri.010G167300 ID=Potri.010G167300.1.v4.1 annot-version=v4.1 MSCNPICKLVQNPFSLFPFVLSFSFLSLLFLVPTFKIPFHHPFFSPRLICYFRMGRVKLKIKKLENTNGRQATFAKRKHGIMKKANELSILCDIDIILLM FSPTGKPSLCKGASSIEEVITKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIPEFLGTSSQTIEDLTSQSRLLQNQLSDVHKRLSKLSFCSYWTNPD KINSIEHLGQLENSLRESLNQIRSCKENLGKQHLMSLDCHTQFQNEMHVPFRMGAEQQLSPLLWIPNNDSQHIMLPEEQNLLPHRDAECTASTSFGSYSG YFGAGKNSELSSSGQESGMNGILDELNGTASLRLRLAGQYPYLPGPYNLNLLNDTKFQPAAEMNIQKGPGDFNVSGSFEAPKPEYDSGPHGWASTSGSCA VTMFDDHLYAPQPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Potri.010G167300 [exp]	0	1
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.007G132900 [exp]	11.61	0.7148
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G086400 [exp]	12.00	0.7429	WRKY13.1
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Potri.002G218100 [exp]	15.23	0.7346
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.005G026900 [exp]	15.96	0.7972
AT1G09040			unknown protein		Potri.013G019300 [exp]	18.73	0.6787
AT5G40440		ATMKK3	mitogen-activated protein kina...		Potri.001G345500 [exp]	21.84	0.6717
AT5G10020			Leucine-rich receptor-like pro...		Potri.005G083000 [exp]	33.40	0.7092
AT3G58650			unknown protein		Potri.010G140900 [exp]	65.23	0.6951
AT4G36945			PLC-like phosphodiesterases su...		Potri.005G139400 [exp]	86.08	0.6888
AT2G19385			zinc ion binding (.1)		Potri.006G146200 [exp]	127.24	0.6558

Compare expression of checked genes

Potri.010G167300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.