Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47500 257 / 3e-80 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) AT5G39660 197 / 2e-57 DOF CDF2, AtDof5. 2 cycling DOF factor 2 (.1.2) AT1G69570 176 / 3e-50 DOF AtDof1,10 Dof-type zinc finger DNA-binding family protein (.1) AT5G62430 150 / 2e-41 DOF CDF1, AtDof5,5 cycling DOF factor 1 (.1) AT1G26790 140 / 4e-37 DOF AtDof1,3 Dof-type zinc finger DNA-binding family protein (.1) AT2G34140 128 / 8e-35 DOF AtDof2. 3 Dof-type zinc finger DNA-binding family protein (.1) AT1G29160 127 / 1e-34 DOF AtDof1. 5 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 107 / 3e-26 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT5G60850 104 / 9e-25 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT3G50410 102 / 2e-24 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087800 [exp] 733 / 0 AT3G47500 249 / 2e-77 cycling DOF factor 3 (.1) Potri.017G084600 [exp] 405 / 4e-137 AT5G39660 314 / 3e-102 cycling DOF factor 2 (.1.2) Potri.004G121800 [exp] 396 / 1e-133 AT3G47500 293 / 5e-94 cycling DOF factor 3 (.1) Potri.013G066700 [exp] 167 / 1e-45 AT3G47500 157 / 2e-42 cycling DOF factor 3 (.1) Potri.019G040700 [exp] 166 / 1e-45 AT5G39660 154 / 1e-41 cycling DOF factor 2 (.1.2) Potri.011G065900 [exp] 122 / 2e-32 AT1G29160 155 / 7e-49 Dof-type zinc finger DNA-binding family protein (.1) Potri.004G056900 [exp] 120 / 4e-32 AT1G29160 186 / 7e-61 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G036400 [exp] 109 / 4e-27 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1) Potri.005G131600 [exp] 106 / 5e-26 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034461 [exp] 294 / 3e-94 AT3G47500 331 / 2e-109 cycling DOF factor 3 (.1) Lus10019093 [exp] 290 / 1e-92 AT3G47500 330 / 8e-109 cycling DOF factor 3 (.1) Lus10036760 [exp] 259 / 2e-82 AT5G39660 200 / 1e-60 cycling DOF factor 2 (.1.2) Lus10037167 [exp] 236 / 9e-73 AT5G39660 214 / 5e-65 cycling DOF factor 2 (.1.2) Lus10020314 [exp] 192 / 2e-56 AT5G62430 196 / 8e-59 cycling DOF factor 1 (.1) Lus10020315 [exp] 190 / 4e-55 AT5G62430 201 / 7e-60 cycling DOF factor 1 (.1) Lus10005677 [exp] 153 / 3e-41 AT5G62430 199 / 3e-59 cycling DOF factor 1 (.1) Lus10013905 [exp] 129 / 3e-35 AT2G34140 171 / 9e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10001896 [exp] 127 / 3e-34 AT2G34140 172 / 3e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10016566 [exp] 107 / 2e-25 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.010G167600.1 pacid=42798710 polypeptide=Potri.010G167600.1.p locus=Potri.010G167600 ID=Potri.010G167600.1.v4.1 annot-version=v4.1 ATGTCGGATTTGGCGATCAAGTTGTTTGGGAAGACGATTCCACTGCAAGTCAATCAGCTGGAGGGGGATGTGTCTTGTGCTATTAACAAGCACGAGTCTT CCTCAGGAACACCAGTTGCCCCACCCGAGCCTGAGGAGTACTGTTACACTGCTACTACTTGCTTGCACGAAAAAGACAAGGAAGAGCAAGAAGGCAACCA CAGGGAGTCTTCAGGAGAGGAAATTGCCAACGAGAAACAAGAAGATGTTACCTCGTGTCAGATCACCGAGGATTCAAAAGATCCAACATCATCAGGAATT AGTGAGAATCCAAAGACTCCCTCAGTTGAGAGGGAAACTTCATCACTGAAAAGCAGTAAGGATGAAGAACAAAGGGAGACAAGCATCTCACAAGAAAAGA CTCTGAAGAAGCCTGATAAAATACTTCCATGCCCTCGATGTAATAGCATGGATACTAAATTCTGTTATTACAACAATTACAACGTCAATCAGCCTCGTCA TTTCTGTAAAAAGTGTCAGAGATACTGGACTGCTGGAGGAACCATGAGGAATGTGCCTGTGGGAGCAGGACGGCGCAAGAATAAGAGCTCTTCAGCTTCA CATTATCGTCACTTAATGGTATCAGAAGCTCTCCGAACAGTTCAAGTCCATGCCATGAATGGAGTTCATAACCCCTCTTTCGGAAACAACACCACTGTCC TTGCATTTGGTTCCGATTCTCCTCTTTGTGATTCTGTTGCCTCTGTGTTGAATCTTTCAGAGAAAACGCAAAATAGTGTTCGAAATGAGTATCACAGGCC TGAACATAGAATCTTTGTTCCTTGTGGAGGGGCGGGAAGTAATGGGGATGATCGCTCAAGTGGATCTCCCGCCACAGCTTCGGATTCATCAGAGAAGGGA TGTAATGGTAATTCGAGAGAAGCAGTTAATAAGGATTATCAATCCTTTCCTCCCCAGGTTCCCTGCTTCCCCGGGCCTCCTTGGCCATATCAATGGAACT CTGCGCTGCCTCCACCTACGTTTTACCCCCCAGGCTTTCCAGTATCGTTTTACCCTGCACCAACTTACTGGGGTTGTACTGTCCCGAGCCCTTGGAATGT ACCGCCATGTGTATCCCCTCCATCAACCTCTCTAAAGCACTGTACCCTAGACTCCAGTCCTACTTCTACACTGGGTAAACATTCAAGGGATGGCAGCATC CTTCATCCAGCCTACTTAAAAGAGCCCTCGAGGGAGGGCACCAAATCAGTAAAAGGTGTTTTGGTTCCGAAGACATCGAGGATTGATGATCCTAGTGAAG CTGCAAAGAGCTCTATATGGGCGACCCTCGGGATCATGAGTGAAAAATCCAATTCTATTAATGGAGGAGGTCTCTTTAAGGGCTTTCAATCAAAAAACGA AGACAAAAATGACATGGCTGGGAGAACTTCAGTGTTGCAAGCGAACCCTGCTGCATTGTCCCGGTCTCTCAATTTCCATGAGAACAATTGA
AA sequence Show only first row Show all	>Potri.010G167600.1 pacid=42798710 polypeptide=Potri.010G167600.1.p locus=Potri.010G167600 ID=Potri.010G167600.1.v4.1 annot-version=v4.1 MSDLAIKLFGKTIPLQVNQLEGDVSCAINKHESSSGTPVAPPEPEEYCYTATTCLHEKDKEEQEGNHRESSGEEIANEKQEDVTSCQITEDSKDPTSSGI SENPKTPSVERETSSLKSSKDEEQRETSISQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSSSAS HYRHLMVSEALRTVQVHAMNGVHNPSFGNNTTVLAFGSDSPLCDSVASVLNLSEKTQNSVRNEYHRPEHRIFVPCGGAGSNGDDRSSGSPATASDSSEKG CNGNSREAVNKDYQSFPPQVPCFPGPPWPYQWNSALPPPTFYPPGFPVSFYPAPTYWGCTVPSPWNVPPCVSPPSTSLKHCTLDSSPTSTLGKHSRDGSI LHPAYLKEPSREGTKSVKGVLVPKTSRIDDPSEAAKSSIWATLGIMSEKSNSINGGGLFKGFQSKNEDKNDMAGRTSVLQANPAALSRSLNFHENN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.010G167600 [exp]	0	1
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.008G087800 [exp]	1.00	0.9274
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.005G084800 [exp]	2.00	0.8934	GCN2.2
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	3.16	0.8799
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Potri.014G022100 [exp]	3.46	0.8803
AT3G10760	GARP		Homeodomain-like superfamily p...		Potri.006G034900 [exp]	5.29	0.8729
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.001G060100 [exp]	6.92	0.8726
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	9.16	0.8635
AT4G38960	CO		B-box type zinc finger family ...		Potri.007G015200 [exp]	9.89	0.8233
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	10.00	0.8492
					Potri.006G044300 [exp]	10.81	0.8715

Compare expression of checked genes

Potri.010G167600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.