Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 654 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 648 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 401 / 1e-133 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 396 / 6e-132 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 391 / 2e-130 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G73050 389 / 1e-129 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 380 / 5e-126 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 360 / 5e-118 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087400 [exp] 765 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 748 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 400 / 1e-133 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 391 / 3e-130 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 382 / 3e-126 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 376 / 3e-124 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 276 / 3e-87 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 65 / 1e-12 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030456 [exp] 747 / 0 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 685 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 682 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 665 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 661 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 645 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 637 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 625 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 614 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030462 [exp] 612 / 0 AT1G14185 567 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00732 [poplar] [flax] GMC_oxred_N GMC oxidoreductase CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.010G168100.1 pacid=42798792 polypeptide=Potri.010G168100.1.p locus=Potri.010G168100 ID=Potri.010G168100.1.v4.1 annot-version=v4.1 ATGGAGCTAACGCTCATTATTTACAGATACGTTCTTTTCACAGCTTTTCTATTTCTAGTACTTGTTAAGTTGTCCCATTCTTTCCCATCGACACAAGGAA AAAACCTTCCCTACTTGACATCAGATGTCGAAGAGGTCTCAGGTAAGTCCTTCGATTACATTGTCGTGGGGGGAGGAACAGCTGGTTGCCCCCTGGCGGC AACTCTTTCCGAGAGATTCTCTGTGCTCGTGATAGAACGGGGAGGCTCGCCTTATGGAAATCCCTTGGTATCAGACAAGATGTACTATGGTTTCCCGTTG ATCCAGCCTGATGAATTTTCATCGGTGGCACAAAGCTTCGTATCGAAAGATGGAGTTGAGAGCCACAGAGGACGAGTTCTGGGAGGATCATCAGCTATAA ATGGTGGGTTCTATAGCAGAGCTAGTGATGATTTTGTTAAAACAGTTGGGTGGGATGAAGAGCTAGTGAAGGAAGCTTATGAATGGGTAGAGTCTAACAT TGTTTTTAAGCCTGAGCTGACCATATGGCAATCTGTTGTAGAATTAGGTCTTCTTGAAGCAGGAATTTTGCCTTATAATGGATTCAGCATGGAACATATA GAGGGAACAAAGATTGGTGGTACTTTGTTTGATGAATATGGAATAAGGCACACCTCAGCAGATCTTCTTGAGATAGGGAATCCAGAAAACATCATTGTTC TTCTGAATGCAACTGTCAAGAACATCATCTTCCATGTCAATGGTAAGGGAAACGAGAGCATGGTCCGTGGTGTCAGGTTCATCAAGAGTGATGGCAGCAC AAGCCAAACGTATGAAGCTTACCTGAATCAACCAGAGAATTCAAGTTCATGGGGTGATGTTATTTTGTCGGCAGGAGCACTAGGCAGTCCTCAAATCCTA TTGTTAAGTGGCATTGGACCCGAAAAACATCTAAGGAACTTCGGTATCCCGCTTGTGTTGGACTTAAAAGGGGTTGGGAAAGAGATGAAAGACAACCCTG GCATTGCCCTTTTGGCGGACACCAAACCAACACACCGATTTCCAGATGCACCTCAAGTTGCGGGCATAACAAAAGACATGAAATTCATTGTTGAGGGGGG CATAGTACCAATAAGCTTCAATGCAACAAGGATGCCAATTGCAATCAAGCTTGCATTTCCAGAATCTAAAGGGACGCTGGAATTGAACAGCACAGACCCT AGGCAAAATCCAGCAGTGGAATTTCACTATCTAGAAAAGGAGAAGGATCTAGAGGAATGTACCAAGATGGTTCAATTACTCAATAAAATAGCAGGGTCAC GATCTGTTGTTCTGTTCCTAGGTAAGGAACCACAAAATAATTTGATGTCTAGTCAGGATGAGCTGAGAAATTTCTGCAAGAAAAATGTCAGGACTTATTA TCACTATCATGGTGGTTCCACTGTTGGCTCAGTCGTGGACGATGATTATAAAGTACATGGGATAAAGGGGTTGAGAGTAATAGATGGCTCAACATTCTTG GAATCACCAGGCACAAATCCAATGGCCACCGTCTTAATGCTAGGAAGGTATCAAGGGATCAAGATTGTCAGGGAAAGGCAGAACACTTCTGTAAGTTGTA GCCCACCACAACTGTAG
AA sequence Show only first row Show all	>Potri.010G168100.1 pacid=42798792 polypeptide=Potri.010G168100.1.p locus=Potri.010G168100 ID=Potri.010G168100.1.v4.1 annot-version=v4.1 MELTLIIYRYVLFTAFLFLVLVKLSHSFPSTQGKNLPYLTSDVEEVSGKSFDYIVVGGGTAGCPLAATLSERFSVLVIERGGSPYGNPLVSDKMYYGFPL IQPDEFSSVAQSFVSKDGVESHRGRVLGGSSAINGGFYSRASDDFVKTVGWDEELVKEAYEWVESNIVFKPELTIWQSVVELGLLEAGILPYNGFSMEHI EGTKIGGTLFDEYGIRHTSADLLEIGNPENIIVLLNATVKNIIFHVNGKGNESMVRGVRFIKSDGSTSQTYEAYLNQPENSSSWGDVILSAGALGSPQIL LLSGIGPEKHLRNFGIPLVLDLKGVGKEMKDNPGIALLADTKPTHRFPDAPQVAGITKDMKFIVEGGIVPISFNATRMPIAIKLAFPESKGTLELNSTDP RQNPAVEFHYLEKEKDLEECTKMVQLLNKIAGSRSVVLFLGKEPQNNLMSSQDELRNFCKKNVRTYYHYHGGSTVGSVVDDDYKVHGIKGLRVIDGSTFL ESPGTNPMATVLMLGRYQGIKIVRERQNTSVSCSPPQL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14185			Glucose-methanol-choline (GMC)...		Potri.010G168100 [exp]	0	1
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.003G155700 [exp]	2.64	0.8635
AT1G54610			Protein kinase superfamily pro...		Potri.008G204400 [exp]	3.16	0.8707
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Potri.009G083800 [exp]	4.24	0.8641
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	6.63	0.8754
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	6.78	0.8927
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	8.83	0.8880	MYB61.2
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.010G089200 [exp]	9.48	0.8502
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	11.31	0.8893
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	11.74	0.8211
AT1G32190			alpha/beta-Hydrolases superfam...		Potri.001G136400 [exp]	13.26	0.8604

Compare expression of checked genes

Potri.010G168100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.